View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4170_low_3 (Length: 404)
Name: NF4170_low_3
Description: NF4170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4170_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 20 - 380
Target Start/End: Complemental strand, 38423739 - 38423379
Alignment:
| Q |
20 |
aaaaggaatgttaattttaattttgagttcttagggaggttaactggtgatacgatatactagttaaagaaaataaaagttgaagttttacattgnnnnn |
119 |
Q |
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| T |
38423739 |
aaaaggaatgttaattttaattttgagttcttagggaggttaactggtgatacgatatactagttaaagaaaataaaagttaaagttttacattgaaaaa |
38423640 |
T |
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| Q |
120 |
nnctg--ttttctttttgtcaaataacctattagttaaaaattcatctttttaaagatgaattctagcttcttttgtgaaccgtacgcatcttgatcaat |
217 |
Q |
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||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
38423639 |
aactgttttttttttttgtcaaataatctattagttaaaaattcatctttttaaagatgaattctagcttcttttgtgaaccata--catcttgatcaat |
38423542 |
T |
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| Q |
218 |
acacaacacttattagcannnnnnngaatttatagaaaactagaacgaaggggtcttacttaccagacacgagtagatactgaaatccatccagttggca |
317 |
Q |
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|||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38423541 |
acacaacaattattagcatttttttgaatttatagaaaactagaaggaaggggtcttacttaccagacacgagtagatactgaaatccatccagttggca |
38423442 |
T |
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| Q |
318 |
catactactaaatttcccatttcataagacgcgtatactcaactcacgtcacgcacgacttga |
380 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38423441 |
catactactaaatttcccatttcataagacgcgtatactcaactcacgtcacgcacgacttga |
38423379 |
T |
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