View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4170_low_6 (Length: 287)
Name: NF4170_low_6
Description: NF4170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4170_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 19 - 227
Target Start/End: Original strand, 33415681 - 33415888
Alignment:
| Q |
19 |
gtttttagataattatagtcacctactaagcatgagtacttgaaaaaatgaagtatttgtatcaaatacacgaatttgagacatattgaggtttttcttt |
118 |
Q |
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| T |
33415681 |
gtttttagataattatagtcacctactaagcatgagtacttgaaaaaatgaagtatttgtatcaaat--acgaatttgagacatattgaggtttttcttt |
33415778 |
T |
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| Q |
119 |
attctctgttgtaagtgaaatttgtgac-ttatgatacataaacacaataatataatggtatttgtgtatttgagttttgctgttgtaagcaaaccacat |
217 |
Q |
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| T |
33415779 |
attctctgttgtaagtgaaatttgtgactttatgatagataaacacaataatataatggtatttgtgtatttgagttttgctgttgtaagaaagccacat |
33415878 |
T |
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| Q |
218 |
tttcttaaaa |
227 |
Q |
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|||||||||| |
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| T |
33415879 |
tttcttaaaa |
33415888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 31 - 144
Target Start/End: Original strand, 33410270 - 33410386
Alignment:
| Q |
31 |
ttatagtcacctactaagcatgagtacttg-----aaaaaatgaagtatttgtatcaaatacacgaatttgagacatattgaggtttttctttattctct |
125 |
Q |
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|||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||| |||||||||||||||||||||||||||| ||| || |
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| T |
33410270 |
ttatagtcacctactaagcatgagtacttggaaaaaaaaaacgaagcatttgtatcaaatac--gaatttgagacatattgaggtttttcttcattatcc |
33410367 |
T |
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| Q |
126 |
gttgtaagtgaaatttgtg |
144 |
Q |
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| T |
33410368 |
attgtaagtgaaatgtgtg |
33410386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 33400014 - 33400061
Alignment:
| Q |
19 |
gtttttagataattatagtcacctactaagcatgagtacttgaaaaaa |
66 |
Q |
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| T |
33400014 |
gtttttaaataattacagtgacctactaagcatgagtacttggaaaaa |
33400061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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