View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4171_high_10 (Length: 251)
Name: NF4171_high_10
Description: NF4171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4171_high_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 234
Target Start/End: Complemental strand, 1560114 - 1559897
Alignment:
| Q |
17 |
cataggagagttggtaactacgcattgttaccacaaagtgagaagtagtatcctacccaataacatccaatcacatgtccacagactaatatataccgca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1560114 |
cataggagagttggtaactacgcattgttaccacaaagtgagaagtagtatcctacccaataacatccaatcacatgtccacagactaatatataccgca |
1560015 |
T |
|
| Q |
117 |
tatggcgattgagaggatccaatttcggacacccatagggtatgagttttcactcgatggggcattactatcatgcccaccttacctcattgttattact |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1560014 |
tatggcgattgagaggatccaatttcggacacctatagggtatgagttttcactcgatggggcattactatcatgcccaccttacctcattgttattact |
1559915 |
T |
|
| Q |
217 |
cttgtgaatgtgactctt |
234 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
1559914 |
cttgtgaatgtgactctt |
1559897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 21 - 234
Target Start/End: Complemental strand, 2090019 - 2089803
Alignment:
| Q |
21 |
ggagagttggtaactac---gcattgttaccacaaagtgagaagtagtatcctacccaataacatccaatcacatgtccacagactaatatataccgcat |
117 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
2090019 |
ggagagttggtaactaccaagcattgttaccacaaagtgagaagtagtatcctacccaaaaatatccaatcacatgttcacacactaatatataccgcat |
2089920 |
T |
|
| Q |
118 |
atggcgattgagaggatccaatttcggacacccatagggtatgagttttcactcgatggggcattactatcatgcccaccttacctcattgttattactc |
217 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
2089919 |
atggtgattgagaggatccaatttcggacacccatagggtatgagtttccactcgatggggtgttactatcatgccaaccttacctcgttgttattactc |
2089820 |
T |
|
| Q |
218 |
ttgtgaatgtgactctt |
234 |
Q |
| |
|
||| |||||| |||||| |
|
|
| T |
2089819 |
ttgagaatgtaactctt |
2089803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University