View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4171_high_12 (Length: 240)
Name: NF4171_high_12
Description: NF4171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4171_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 16 - 225
Target Start/End: Original strand, 39130020 - 39130229
Alignment:
| Q |
16 |
gagaacaagtggtggagcttgagtcaaaggagaagctctttgaaggccgtgtaaatgagctgaagttaaaagagaagcaacatgaagaccaagtgatgga |
115 |
Q |
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| T |
39130020 |
gagaacaagtggtggagcttgagtcaaaggagaagctctttgaaggccgtgtaaatgagctgaagttaaaagagaagcaacatgaagaccaagtgatgga |
39130119 |
T |
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| Q |
116 |
gttcaagtcgaaggtgcagaaatatcatggccaaatgaagcagcttgaatctgaaaagaagcatttcagtagccgagtgaaggggcaggaattaaaagag |
215 |
Q |
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| T |
39130120 |
gttcaagtcgaaggtgcagaaatatcatggccaaatgaagcagcttgaatctgaaaagaagcatttcagtagccgagtgaaggggcaggaattaaaagag |
39130219 |
T |
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| Q |
216 |
aggcaatatg |
225 |
Q |
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|||||||||| |
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| T |
39130220 |
aggcaatatg |
39130229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 222
Target Start/End: Original strand, 39124056 - 39124265
Alignment:
| Q |
13 |
gcagagaacaagtggtggagcttgagtcaaaggagaagctctttgaaggccgtgtaaatgagctgaagttaaaagagaagcaacatgaagaccaagtgat |
112 |
Q |
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| T |
39124056 |
gcagagaacgaatggtggagctcgagtcaaaggagaagctctttaaaggctgtgtaaacaagctcaagttaaaagagaagcacctcgaaggccaagtgaa |
39124155 |
T |
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| Q |
113 |
ggagttcaagtcgaaggtgcagaaatatcatggccaaatgaagcagcttgaatctgaaaagaagcatttcagtagccgagtgaaggggcaggaattaaaa |
212 |
Q |
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| T |
39124156 |
ggagttcaaatcaaaggtggagagatttctttgtgagatgaaggaacttgattctgaaaagaagcatgtcgatagccgaatgaaggagctgaaactaaaa |
39124255 |
T |
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| Q |
213 |
gagaggcaat |
222 |
Q |
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|||| ||||| |
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| T |
39124256 |
gagatgcaat |
39124265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 222
Target Start/End: Original strand, 39143176 - 39143381
Alignment:
| Q |
17 |
agaacaagtggtggagcttgagtcaaaggagaagctctttgaaggccgtgtaaatgagctgaagttaaaagagaagcaacatgaagaccaagtgatggag |
116 |
Q |
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||||| || ||||||||||||| | ||||||||||||||||||||||||||||| ||||| |||||||||||||| | | ||| |||||| |||| |
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| T |
39143176 |
agaacgagcggtggagcttgaggccaaggagaagctctttgaaggccgtgtaaaggagctcaagttaaaagagaatcggctcaaaggtgaagtgaaggag |
39143275 |
T |
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| Q |
117 |
ttcaagtcgaaggtgcagaaatatcatggccaaatgaagcagcttgaatctgaaaagaagcatttcagtagccgagtgaaggggcaggaattaaaagaga |
216 |
Q |
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|| | | |||| || |||||| |||| | |||| |||| ||||||||||| |||||||| |||| |||||| ||||||| || | | | |||||||| |
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| T |
39143276 |
tttgaattgaagttggagaaatttcattggcaaacgaaggagcttgaatctaaaaagaagaattttgatagccgggtgaaggagctgaattcaaaagaga |
39143375 |
T |
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| Q |
217 |
ggcaat |
222 |
Q |
| |
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|||||| |
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| T |
39143376 |
ggcaat |
39143381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 17 - 198
Target Start/End: Complemental strand, 39495077 - 39494896
Alignment:
| Q |
17 |
agaacaagtggtggagcttgagtcaaaggagaagctctttgaaggccgtgtaaatgagctgaagttaaaagagaagcaacatgaagaccaagtgatggag |
116 |
Q |
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||||| || |||||||||||||||||||||||||||||||||||| |||||||| |||| |||| |||| ||||||||| || |||||||| ||| |
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| T |
39495077 |
agaacgagcggtggagcttgagtcaaaggagaagctctttgaaggtcgtgtaaagaagctcaagtcaaaaaagaagcaactcaaaagccaagtgaaagag |
39494978 |
T |
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| Q |
117 |
ttcaagtcgaaggtgcagaaatatcatggccaaatgaagcagcttgaatctgaaaagaagcatttcagtagccgagtgaagg |
198 |
Q |
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|| | | | | || |||||| |||||||||||| || ||||||||| ||||||| ||||||| |||||| ||||||| |
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| T |
39494977 |
tttgaaccaatgttggagaaatttcatggccaaataaaagagcttgaatatgaaaagcagcattttgatagccgggtgaagg |
39494896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 26 - 181
Target Start/End: Complemental strand, 39427231 - 39427076
Alignment:
| Q |
26 |
ggtggagcttgagtcaaaggagaagctctttgaaggccgtgtaaatgagctgaagttaaaagagaagcaacatgaagaccaagtgatggagttcaagtcg |
125 |
Q |
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||||| |||||||||||||||||||| |||||||||| | ||||||||| | |||||||||||||| || | ||||| || || |||||| | | | |
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| T |
39427231 |
ggtggtgcttgagtcaaaggagaagcactttgaaggctgcgtaaatgagatcaagttaaaagagaatcagctcaaagacgaaaggaaggagtttacattg |
39427132 |
T |
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| Q |
126 |
aaggtgcagaaatatcatggccaaatgaagcagcttgaatctgaaaagaagcattt |
181 |
Q |
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||| || |||||| | || ||||| || | ||||||||||||||||||||||||| |
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| T |
39427131 |
aagttggagaaatttgattaccaaacgagggagcttgaatctgaaaagaagcattt |
39427076 |
T |
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