View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4171_low_15 (Length: 266)
Name: NF4171_low_15
Description: NF4171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4171_low_15 |
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| [»] scaffold0393 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 257
Target Start/End: Original strand, 38626496 - 38626735
Alignment:
| Q |
18 |
aataatcccatcaaatcaatctggaacaagaaacaagccatgtttaacactagcaggtacacgaaagaaacaacataagattaaaaaattaaagacacac |
117 |
Q |
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| T |
38626496 |
aataatcccatcaaatcaatctggaacaagaaacaagccatgtttaacactagcaggtacacgaaagaaacaacataagattaaaaaattaaagacacac |
38626595 |
T |
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| Q |
118 |
agaaaattatgtgtgtgtttcgtctcaattttggatggagcaaattttattttgacatgtttggatgtttccagtaaaattgattttgcctcgggaattg |
217 |
Q |
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| T |
38626596 |
agaaaattatgtgtgcgtttcgtctcaattttggatggagcaaattttattttgacatgtttggatgtttccagtaaaattgattttgcctcgggaattg |
38626695 |
T |
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| Q |
218 |
attataacttgagacttgaatttgtatctttcatctcact |
257 |
Q |
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| T |
38626696 |
attataacttgagacttgaatttgtatctttcaactcact |
38626735 |
T |
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Target: scaffold0393 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0393
Description:
Target: scaffold0393; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 12444 - 12378
Alignment:
| Q |
164 |
ttattttgacatgtttggatgtt-tccagtaaaattgattttgcctcgggaattgattataacttga |
229 |
Q |
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| T |
12444 |
ttattttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttga |
12378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 229
Target Start/End: Original strand, 10898672 - 10898736
Alignment:
| Q |
166 |
attttgacatgtttggatgtt-tccagtaaaattgattttgcctcgggaattgattataacttga |
229 |
Q |
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| T |
10898672 |
attttgacatgtttggttgctctcgagtaaaattgattttgcctctagaattgattctaacttga |
10898736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 226
Target Start/End: Original strand, 38045390 - 38045460
Alignment:
| Q |
157 |
gcaaattttattttgacatgtttggatgtt-tccagtaaaattgattttgcctcgggaattgattataact |
226 |
Q |
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| T |
38045390 |
gcaaaattgattttgacatgtttgaatgttctcaagtagaattgattttgcctccggtattgattttaact |
38045460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 29922575 - 29922640
Alignment:
| Q |
165 |
tattttgacatgtttggatgtt-tccagtaaaattgattttgcctcgggaattgattataacttga |
229 |
Q |
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| T |
29922575 |
tattttgacatgtttgattgttctctagtagaattgattttgcctcaagaattgattttaacttga |
29922640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 2171738 - 2171801
Alignment:
| Q |
167 |
ttttgacatgtttggatgtt-tccagtaaaattgattttgcctcgggaattgattataacttga |
229 |
Q |
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| T |
2171738 |
ttttgacatgtttggatgttctcgagtaaaattgactttgcccccggaattgattcgaacttga |
2171801 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 229
Target Start/End: Original strand, 45369107 - 45369176
Alignment:
| Q |
161 |
attttattttgacatgtttggatgtt-tccagtaaaattgattttgcctcgggaattgattataacttga |
229 |
Q |
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| T |
45369107 |
atttgattttgagatgtttggatgttctcaagtagaattgattttgcttctagaattgattttaacttga |
45369176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 209
Target Start/End: Complemental strand, 5997418 - 5997374
Alignment:
| Q |
166 |
attttgacatgtttggatg-tttccagtaaaattgattttgcctc |
209 |
Q |
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| T |
5997418 |
attttgacatgtttggatgtttttgagtaaaattgattttgcctc |
5997374 |
T |
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