View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4171_low_18 (Length: 248)
Name: NF4171_low_18
Description: NF4171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4171_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 77 - 234
Target Start/End: Complemental strand, 5018294 - 5018136
Alignment:
| Q |
77 |
gtacaagtcatttctcacttgctaacaagtgactatttgtggtttttgtagggttc-aaagtaaatttagtcatcacagaccattgcatgctagggatga |
175 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||| |
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| T |
5018294 |
gtacaagtcatttctcacttgctaacaagtgactatttgtggtttttgtagggttccaaagtaaatttagtcatcagagaccattgcatgccagggatga |
5018195 |
T |
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| Q |
176 |
caggctatgagttactttagaaaattaaggtacttatagtgttggtttggtggttaatg |
234 |
Q |
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| T |
5018194 |
caggctatgagttacttaagaaaattaaggtacttatagcgttggtttggtggttaatg |
5018136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 77 - 233
Target Start/End: Original strand, 9814214 - 9814371
Alignment:
| Q |
77 |
gtacaagtcatttctcacttgctaacaagtgactatttgtggtttttgtagggttc-aaagtaaatttagtcatcacagaccattgcatgctagggatga |
175 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
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| T |
9814214 |
gtacaagtcatttctcacttgctaacaagtgactatttgtgatttttgtagggttccaaagtaaatttagtcatcacagaccattgcatgccagggatga |
9814313 |
T |
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| Q |
176 |
caggctatgagttactttagaaaattaaggtacttatagtgttggtttggtggttaat |
233 |
Q |
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| T |
9814314 |
gagactatgagttacttaagaaaattaaggtacttatagtgttggtttggtggttaat |
9814371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 77 - 233
Target Start/End: Original strand, 23165603 - 23165760
Alignment:
| Q |
77 |
gtacaagtcatttctcacttgctaacaagtgactatttgtggtttttgtagggttc-aaagtaaatttagtcatcacagaccattgcatgctagggatga |
175 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||| |
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| T |
23165603 |
gtacaagtcatttctcacttgctaacaagtgactatttgtggtttttgtagggttccaaagtaaatttagtcatcagagaccattgcatgccagggatga |
23165702 |
T |
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| Q |
176 |
caggctatgagttactttagaaaattaaggtacttatagtgttggtttggtggttaat |
233 |
Q |
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||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||| |
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| T |
23165703 |
caggctatgagttacttaagaaaaataaggtacttatagcgttggtttggtggttaat |
23165760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 87 - 210
Target Start/End: Complemental strand, 42883635 - 42883513
Alignment:
| Q |
87 |
tttctcacttgctaacaagtgactatttgtggtttttgtagggttc-aaagtaaatttagtcatcacagaccattgcatgctagggatgacaggctatga |
185 |
Q |
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||||||||||||||||||||| |||||||||||||| ||||| | ||||| || ||| ||||||| ||| | ||||||| ||||||||| |||||||| |
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| T |
42883635 |
tttctcacttgctaacaagtg--tatttgtggtttttatagggacccaaagtgaacttaatcatcactgactactgcatgccagggatgactggctatga |
42883538 |
T |
|
| Q |
186 |
gttactttagaaaattaaggtactt |
210 |
Q |
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||| ||| ||||||||||||||||| |
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| T |
42883537 |
gttgcttaagaaaattaaggtactt |
42883513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 77 - 234
Target Start/End: Original strand, 42663543 - 42663700
Alignment:
| Q |
77 |
gtacaagtcatttctcacttgctaacaagtgactatttgtggtttttgtagggttc-aaagtaaatttagtcatcacagaccattgcatgctagggatga |
175 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||| |||||||| |
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| T |
42663543 |
gtacaagtcatttctcacttgctaacaagtgactatttgtggtttt-gtagggttccaaagtaaatttagtcatcagagaccattgcatgccagggatga |
42663641 |
T |
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| Q |
176 |
caggctatgagttactttagaaaattaaggtacttatagtgttggtttggtggttaatg |
234 |
Q |
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||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
42663642 |
caggctatgagttacttaagaaaattaaggtacttatagcgttggtttggtggttaatg |
42663700 |
T |
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