View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4171_low_2 (Length: 513)

Name: NF4171_low_2
Description: NF4171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4171_low_2
NF4171_low_2
[»] chr5 (27 HSPs)
chr5 (71-251)||(29851467-29851643)
chr5 (71-225)||(29870354-29870508)
chr5 (376-505)||(30398663-30398793)
chr5 (374-505)||(30481979-30482111)
chr5 (71-224)||(30244227-30244380)
chr5 (374-505)||(30339849-30339981)
chr5 (376-505)||(30434471-30434601)
chr5 (374-505)||(29870833-29870965)
chr5 (381-505)||(30748297-30748422)
chr5 (383-505)||(30243696-30243819)
chr5 (360-452)||(17419269-17419361)
chr5 (375-505)||(30058936-30059067)
chr5 (358-505)||(29851930-29852078)
chr5 (420-505)||(4380357-4380443)
chr5 (71-152)||(30398558-30398639)
chr5 (369-434)||(30678629-30678694)
chr5 (285-356)||(29870580-29870654)
chr5 (284-362)||(30714707-30714789)
chr5 (284-353)||(30678918-30678987)
chr5 (384-451)||(29710349-29710416)
chr5 (388-513)||(30205102-30205228)
chr5 (389-442)||(30202743-30202796)
chr5 (283-317)||(30340226-30340260)
chr5 (283-317)||(30481726-30481760)
chr5 (283-317)||(30748025-30748059)
chr5 (283-312)||(30244072-30244101)
chr5 (283-312)||(30434200-30434229)
[»] chr7 (1 HSPs)
chr7 (378-502)||(26705914-26706039)
[»] chr4 (4 HSPs)
chr4 (383-496)||(20298080-20298194)
chr4 (285-356)||(20298365-20298434)
chr4 (379-436)||(13615444-13615501)
chr4 (384-452)||(20304007-20304074)
[»] chr1 (1 HSPs)
chr1 (378-436)||(7097997-7098055)


Alignment Details
Target: chr5 (Bit Score: 100; Significance: 3e-49; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 71 - 251
Target Start/End: Original strand, 29851467 - 29851643
Alignment:
Q  71 cttgatgatcagacttgctaatgggcacggagctcctacccacatcccgattatcaaaattgcaatcctcgataccgccaccggacttgttgtcacctct 170  Q
    ||||||||| ||| |||||||||||||| ||||||| || |    || || ||||||||| ||||||||||||||| ||||||||||| |||||| |||     
T  29851467 cttgatgattagagttgctaatgggcacagagctccgacgc----cctgactatcaaaatcgcaatcctcgataccaccaccggacttattgtcatctcc 29851562  T
Q  171 tccactacaaaagacgttctcttcattattaggtacgtttgttacggttaatcccattaaatcagaagtcaacaattaaaa 251  Q
    |||||| ||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  29851563 tccactccaaaagacgttctcttcatcattaggtacgtttgttaccgttaatccctttaaatcagaagtcaacaattaaaa 29851643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 71 - 225
Target Start/End: Original strand, 29870354 - 29870508
Alignment:
Q  71 cttgatgatcagacttgctaatgggcacggagctcctacccacatcccgattatcaaaattgcaatcctcgataccgccaccggacttgttgtcacctct 170  Q
    ||||||||||||| ||||||||||||||| |||||  ||||||  ||  | ||||||||| ||||||||||||||| |||||||||| |||||||||||     
T  29870354 cttgatgatcagagttgctaatgggcacgcagctctgacccacgccctcactatcaaaatcgcaatcctcgataccaccaccggactcgttgtcacctcc 29870453  T
Q  171 tccactacaaaagacgttctcttcattattaggtacgtttgttacggttaatccc 225  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  29870454 tccactccaaaagacgttctcttcatcattaggtacgtttgttacggttaatccc 29870508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 376 - 505
Target Start/End: Original strand, 30398663 - 30398793
Alignment:
Q  376 aactttatttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatctttcctctaatgttggccaatcaccgattgtcagatcct 475  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||  |||||||||| |||    
T  30398663 aactgtatttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctttaatgttgggcaatcattgattgtcagaacct 30398762  T
Q  476 caagag-agtgaggtgtcgaataccctccgg 505  Q
    |||||| ||||||||||| ||||||||||||    
T  30398763 caagagaagtgaggtgtctaataccctccgg 30398793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 374 - 505
Target Start/End: Original strand, 30481979 - 30482111
Alignment:
Q  374 taaactttatttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatctttcctctaatgttggccaatcaccgattgtcagatc 473  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| || || |  ||||||||| |    
T  30481979 taaactgtatttttggaatatgagctatcttgtcccaatcctcccatgttccctctttgcatcgttcctctaatgttgggcattcccaaattgtcagaac 30482078  T
Q  474 ctcaagag-agtgaggtgtcgaataccctccgg 505  Q
    |||||||| ||||||||||||||||||||||||    
T  30482079 ctcaagagaagtgaggtgtcgaataccctccgg 30482111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 71 - 224
Target Start/End: Complemental strand, 30244380 - 30244227
Alignment:
Q  71 cttgatgatcagacttgctaatgggcacggagctcctacccacatcccgattatcaaaattgcaatcctcgataccgccaccggacttgttgtcacctct 170  Q
    ||||||||||||||| |||||||||||  ||||||||||||||| || ||| |||||||| |||||||||||| || | || ||||| |||||||||||     
T  30244380 cttgatgatcagactcgctaatgggcattgagctcctacccacaccctgataatcaaaatcgcaatcctcgatgccacgactggactcgttgtcacctcc 30244281  T
Q  171 tccactacaaaagacgttctcttcattattaggtacgtttgttacggttaatcc 224  Q
    |||||| ||||||| ||||||||||| |||||||||||||||| ||||||||||    
T  30244280 tccactccaaaagatgttctcttcatcattaggtacgtttgttccggttaatcc 30244227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 374 - 505
Target Start/End: Complemental strand, 30339981 - 30339849
Alignment:
Q  374 taaactttatttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatctttcctctaatgttggccaatcaccgattgtcagatc 473  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |  ||| ||||||      
T  30339981 taaactgtatatttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctctaatgttgggcaattaatgatagtcagaag 30339882  T
Q  474 ctcaagag-agtgaggtgtcgaataccctccgg 505  Q
    |||||||| ||||||||||||||||||||||||    
T  30339881 ctcaagagaagtgaggtgtcgaataccctccgg 30339849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 376 - 505
Target Start/End: Original strand, 30434471 - 30434601
Alignment:
Q  376 aactttatttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatctttcctctaatgttggccaatcaccgattgtcagatcct 475  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||  ||| | ||||  ||    
T  30434471 aactctattcttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctttaatgttgggcaatcaatgatagacagaagct 30434570  T
Q  476 caagag-agtgaggtgtcgaataccctccgg 505  Q
    |||||| ||||||||||||||||||||||||    
T  30434571 caagagaagtgaggtgtcgaataccctccgg 30434601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 374 - 505
Target Start/End: Original strand, 29870833 - 29870965
Alignment:
Q  374 taaactttatttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatctttcctctaatgttggccaatcaccgattgtcagatc 473  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |  | |||| ||||      
T  29870833 taaactgtattattggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctctaatgttgggcaaccctcaattgccagaag 29870932  T
Q  474 ctcaagag-agtgaggtgtcgaataccctccgg 505  Q
    |||||| | ||||||||||||||||||||||||    
T  29870933 ctcaagtgaagtgaggtgtcgaataccctccgg 29870965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 381 - 505
Target Start/End: Original strand, 30748297 - 30748422
Alignment:
Q  381 tatttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatctttcctctaatgttggccaatcaccgattgtcagatcctcaaga 480  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||  |||    |||  |||||||    
T  30748297 tatttttggaatatgagctatcttgtcccaatcctcccatgttccctctttgcatcgttcctctaatgttgggcaatcaatgatatcaagaagctcaaga 30748396  T
Q  481 g-agtgaggtgtcgaataccctccgg 505  Q
    | ||||||||||||||||||||||||    
T  30748397 gaagtgaggtgtcgaataccctccgg 30748422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 383 - 505
Target Start/End: Complemental strand, 30243819 - 30243696
Alignment:
Q  383 tttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatctttcctctaatgttggccaatcaccgattgtcagatcctcaagag- 481  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || | |   ||  ||| | |||||||||     
T  30243819 tttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctctaatgttggacatttataaatattcaaaacctcaagaga 30243720  T
Q  482 agtgaggtgtcgaataccctccgg 505  Q
    ||||||||||||||||||||||||    
T  30243719 agtgaggtgtcgaataccctccgg 30243696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 360 - 452
Target Start/End: Complemental strand, 17419361 - 17419269
Alignment:
Q  360 tgcttcttaaaacataaactttatttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatctttcctctaatgttgg 452  Q
    |||||||||| || | |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||    
T  17419361 tgcttcttaatactttaactttatttttggaatatgagctatcttgtcccaatcctccccggttccctccttgcatcgttcctctaatgttgg 17419269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 375 - 505
Target Start/End: Original strand, 30058936 - 30059067
Alignment:
Q  375 aaactttatttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatctttcctctaatgttggccaatcaccgattgtcagatcc 474  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||||| ||  ||||||| ||||| ||||||| | ||| ||  ||| ||||||  |    
T  30058936 aaactgtatttttggaatatgagatatcttgtcccaatcctcccctgttcgcttcttgcatcgttcctttaatgttcggcaaccaatgatagtcagaagc 30059035  T
Q  475 tcaagag-agtgaggtgtcgaataccctccgg 505  Q
    ||||||| ||||||||||||||||||||||||    
T  30059036 tcaagagaagtgaggtgtcgaataccctccgg 30059067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 358 - 505
Target Start/End: Original strand, 29851930 - 29852078
Alignment:
Q  358 tctgcttcttaaaacataaactttatttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatctttcctctaatgttggccaat 457  Q
    |||||||||||| |  |||||| ||| ||||||||||||| |||||||||||||||||| | ||||||| ||||||||| ||||||||||||||| ||||    
T  29851930 tctgcttcttaatagttaaactgtatatttggaatatgagatatcttgtcccaatcctcacatgttcccactttgcatcgttcctctaatgttgggcaat 29852029  T
Q  458 caccgattgtcagatcctcaagag-agtgaggtgtcgaataccctccgg 505  Q
         |||| ||||  |||||||| ||||||||||| ||||||||||||    
T  29852030 ttttaattgacagaagctcaagagaagtgaggtgtccaataccctccgg 29852078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 420 - 505
Target Start/End: Original strand, 4380357 - 4380443
Alignment:
Q  420 tgttccctctttgcatctttcctctaatgttggccaatcaccgattgtcagatcctcaagag-agtgaggtgtcgaataccctccgg 505  Q
    ||||||||||||||||| ||||||||||||||| ||| ||  |||| ||||| ||||||||| ||||||||||||||||||||||||    
T  4380357 tgttccctctttgcatcgttcctctaatgttgggcaaccaatgattctcagaacctcaagagaagtgaggtgtcgaataccctccgg 4380443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 71 - 152
Target Start/End: Original strand, 30398558 - 30398639
Alignment:
Q  71 cttgatgatcagacttgctaatgggcacggagctcctacccacatcccgattatcaaaattgcaatcctcgataccgccacc 152  Q
    |||||||||||||||||||||||||||| ||||||| |||||   ||||||| ||||||| ||||||||||||||| |||||    
T  30398558 cttgatgatcagacttgctaatgggcacagagctccgacccatgccccgattgtcaaaatcgcaatcctcgatacccccacc 30398639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 369 - 434
Target Start/End: Complemental strand, 30678694 - 30678629
Alignment:
Q  369 aaacataaactttatttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgca 434  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  30678694 aaacttaaactgtatttttggaatatgagctatcttgtcccaatcctcccccattccctctttgca 30678629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 285 - 356
Target Start/End: Original strand, 29870580 - 29870654
Alignment:
Q  285 atgatgaagaaaattacctgaattagaacattta---tgcttaggttgaagagtaaaatatctttcatgtactct 356  Q
    ||||||||||||||||||||||||||||||||||   | |||||| |||| ||||||||||||||||||||||||    
T  29870580 atgatgaagaaaattacctgaattagaacatttatccttcttaggatgaacagtaaaatatctttcatgtactct 29870654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 284 - 362
Target Start/End: Complemental strand, 30714789 - 30714707
Alignment:
Q  284 tatgatgaagaaaattacctgaattagaacatttatgcttaggttg----aagagtaaaatatctttcatgtactctttctgc 362  Q
    ||||||||||||||||||||||||||||||| || | |||||||||    |  ||||||||||||||||||||||||||||||    
T  30714789 tatgatgaagaaaattacctgaattagaacaattgtccttaggttggttgagtagtaaaatatctttcatgtactctttctgc 30714707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 284 - 353
Target Start/End: Complemental strand, 30678987 - 30678918
Alignment:
Q  284 tatgatgaagaaaattacctgaattagaacatttatgcttaggttgaagagtaaaatatctttcatgtac 353  Q
    ||||||||||||||||||| ||||||||||| || | | ||||||||  |||||||||||||||||||||    
T  30678987 tatgatgaagaaaattaccagaattagaacaattgtccgtaggttgagcagtaaaatatctttcatgtac 30678918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 384 - 451
Target Start/End: Complemental strand, 29710416 - 29710349
Alignment:
Q  384 ttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatctttcctctaatgttg 451  Q
    |||||||| ||| |||||||||||| ||||||||| || |||||| ||||||| ||||||||||||||    
T  29710416 ttttggaacatgcgctatcttgtcctaatcctcccttgctccctccttgcatcgttcctctaatgttg 29710349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 388 - 513
Target Start/End: Original strand, 30205102 - 30205228
Alignment:
Q  388 ggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatctttcctctaatgttggccaatcaccgattgtcagatcctcaagag-agtga 486  Q
    |||||||| | |||||||| ||| ||||| ||||||||||| |||||||  || |||| |||||| ||| |||  |||||||||  ||| |||| |||||    
T  30205102 ggaatatgcgatatcttgtaccagtcctctcctgttccctccttgcatcgctcttctagtgttggacaaccacgaattgtcagaagctccagagaagtga 30205201  T
Q  487 ggtgtcgaataccctccggtaatcatc 513  Q
    | ||||||||||| |||||||| ||||    
T  30205202 gatgtcgaataccttccggtaagcatc 30205228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 389 - 442
Target Start/End: Original strand, 30202743 - 30202796
Alignment:
Q  389 gaatatgagctatcttgtcccaatcctcccctgttccctctttgcatctttcct 442  Q
    ||||||| |||||||||||||| | ||||||||||||||| ||||||| |||||    
T  30202743 gaatatgtgctatcttgtcccagttctcccctgttccctccttgcatcgttcct 30202796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 283 - 317
Target Start/End: Complemental strand, 30340260 - 30340226
Alignment:
Q  283 ctatgatgaagaaaattacctgaattagaacattt 317  Q
    |||||||||||||||| ||||||||||||||||||    
T  30340260 ctatgatgaagaaaatgacctgaattagaacattt 30340226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 283 - 317
Target Start/End: Original strand, 30481726 - 30481760
Alignment:
Q  283 ctatgatgaagaaaattacctgaattagaacattt 317  Q
    |||||||||||||||| ||||||||||||||||||    
T  30481726 ctatgatgaagaaaatgacctgaattagaacattt 30481760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 283 - 317
Target Start/End: Original strand, 30748025 - 30748059
Alignment:
Q  283 ctatgatgaagaaaattacctgaattagaacattt 317  Q
    |||||||||||||||| ||||||||||||||||||    
T  30748025 ctatgatgaagaaaatgacctgaattagaacattt 30748059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 312
Target Start/End: Complemental strand, 30244101 - 30244072
Alignment:
Q  283 ctatgatgaagaaaattacctgaattagaa 312  Q
    ||||||||||||||||||||||||||||||    
T  30244101 ctatgatgaagaaaattacctgaattagaa 30244072  T

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Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 312
Target Start/End: Original strand, 30434200 - 30434229
Alignment:
Q  283 ctatgatgaagaaaattacctgaattagaa 312  Q
    ||||||||||||||||||||||||||||||    
T  30434200 ctatgatgaagaaaattacctgaattagaa 30434229  T

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Target: chr7 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 378 - 502
Target Start/End: Original strand, 26705914 - 26706039
Alignment:
Q  378 ctttatttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatctttcctctaatgttggccaatcaccgattgtcagatcctca 477  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||   |  ||| |||||  ||||    
T  26705914 ctttatttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctctaatgttgggcaactccaaattctcagaaactca 26706013  T
Q  478 agag-agtgaggtgtcgaataccctc 502  Q
    |||| |||||||||||||||||||||    
T  26706014 agagaagtgaggtgtcgaataccctc 26706039  T

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Target: chr4 (Bit Score: 63; Significance: 4e-27; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 383 - 496
Target Start/End: Complemental strand, 20298194 - 20298080
Alignment:
Q  383 tttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatctttcctctaatgttggccaatcaccgattgtcagatcctcaagag- 481  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |  || |||||| || |||| |||||| ||||||  ||||||||     
T  20298194 tttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgtaactttaatgtggggcaataaccgatagtcagaagctcaagaga 20298095  T
Q  482 agtgaggtgtcgaat 496  Q
    |||||||||| ||||    
T  20298094 agtgaggtgttgaat 20298080  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 285 - 356
Target Start/End: Complemental strand, 20298434 - 20298365
Alignment:
Q  285 atgatgaagaaaattacctgaattagaacatttatgcttaggttgaagagtaaaatatctttcatgtactct 356  Q
    ||||||||||||||||||||||||||||||||||| ||  ||||||| |||||||||| |||||||||||||    
T  20298434 atgatgaagaaaattacctgaattagaacatttatcct--ggttgaacagtaaaatatatttcatgtactct 20298365  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 379 - 436
Target Start/End: Original strand, 13615444 - 13615501
Alignment:
Q  379 tttatttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatc 436  Q
    |||| |||||||||||| |||||||||||||| || |||| ||||||||| |||||||    
T  13615444 tttagttttggaatatgcgctatcttgtcccagtcttcccatgttccctccttgcatc 13615501  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 384 - 452
Target Start/End: Complemental strand, 20304074 - 20304007
Alignment:
Q  384 ttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatctttcctctaatgttgg 452  Q
    |||||||||||| |||||||||| ||||||||| |||||||||   ||||| | ||||| |||||||||    
T  20304074 ttttggaatatgcgctatcttgt-ccaatcctcgcctgttcccgtcttgcaccgttcctttaatgttgg 20304007  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 378 - 436
Target Start/End: Original strand, 7097997 - 7098055
Alignment:
Q  378 ctttatttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatc 436  Q
    ||||| |||||||||||| |||||||||||||| || |||||||||||||| |||||||    
T  7097997 ctttagttttggaatatgggctatcttgtcccagtcttcccctgttccctccttgcatc 7098055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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