View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4171_low_3 (Length: 469)

Name: NF4171_low_3
Description: NF4171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4171_low_3
NF4171_low_3
[»] chr3 (9 HSPs)
chr3 (187-458)||(1258664-1258935)
chr3 (187-458)||(37241952-37242223)
chr3 (186-458)||(34873478-34873737)
chr3 (187-280)||(13809926-13810019)
chr3 (188-225)||(44445490-44445527)
chr3 (188-224)||(41638480-41638516)
chr3 (187-225)||(34872964-34873002)
chr3 (196-225)||(1259717-1259746)
chr3 (196-225)||(37243005-37243034)
[»] chr8 (4 HSPs)
chr8 (188-458)||(2319993-2320263)
chr8 (234-339)||(38544223-38544328)
chr8 (188-228)||(10382031-10382071)
chr8 (188-225)||(9484265-9484302)
[»] chr4 (2 HSPs)
chr4 (188-458)||(16990377-16990647)
chr4 (186-231)||(52720595-52720640)
[»] chr7 (3 HSPs)
chr7 (187-458)||(31234115-31234386)
chr7 (188-225)||(41236789-41236826)
chr7 (196-230)||(31235164-31235198)
[»] chr6 (1 HSPs)
chr6 (188-334)||(18246177-18246323)
[»] chr5 (3 HSPs)
chr5 (219-330)||(39087407-39087518)
chr5 (187-225)||(3135922-3135960)
chr5 (189-225)||(27645836-27645872)
[»] chr2 (4 HSPs)
chr2 (51-113)||(6090401-6090463)
chr2 (240-330)||(20040174-20040262)
chr2 (152-187)||(6091092-6091127)
chr2 (188-225)||(16043374-16043411)
[»] chr1 (4 HSPs)
chr1 (185-225)||(45320453-45320493)
chr1 (187-225)||(33284507-33284545)
chr1 (187-225)||(41465235-41465273)
chr1 (196-225)||(41466221-41466250)


Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 187 - 458
Target Start/End: Original strand, 1258664 - 1258935
Alignment:
Q  187 aggtggcatttcacatgggaaggtataaaaccttcccactataggtcacacaagataaatggttagattatgcatttctattaaagcttatcatgttctc 286  Q
    ||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1258664 aggtggcatttcacatgggaaggtataaaaccttcccaccatggatcacacaagataaatggttagattatgcatttctattaaagcttatcatgttctc 1258763  T
Q  287 ccacatctgatctcaatagcttcactttccaaacttttctcatcttgctcccaactttgtggccgtctccctccaggctccatctcccacaaccagcaac 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  1258764 ccacatctgatctcaatagcttcactttccaaacttttctcatcttgctcccagctttgtggccgtctccctctaggctccatctcccacaaccagcaac 1258863  T
Q  387 caccttcaaagaaacaccaccaataattgaaacctctttaagtgtgtgaaccaaagcatgacttaccttcat 458  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1258864 caccttcaaagaaacaccaccaataattgaaacctctttaagtgtgtgaaccaaagcatgacttaccttcat 1258935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 187 - 458
Target Start/End: Original strand, 37241952 - 37242223
Alignment:
Q  187 aggtggcatttcacatgggaaggtataaaaccttcccactataggtcacacaagataaatggttagattatgcatttctattaaagcttatcatgttctc 286  Q
    ||||||||||||| |||||||||||||||||||||| || || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  37241952 aggtggcatttcatatgggaaggtataaaaccttcctaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctc 37242051  T
Q  287 ccacatctgatctcaatagcttcactttccaaacttttctcatcttgctcccaactttgtggccgtctccctccaggctccatctcccacaaccagcaac 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  37242052 ccacatctgatctcaatagcttcactttccaaacttttctcatcttgctcccagctttgtggccgtctccctccaggctccatctcccacaaccagcaac 37242151  T
Q  387 caccttcaaagaaacaccaccaataattgaaacctctttaagtgtgtgaaccaaagcatgacttaccttcat 458  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37242152 caccttcaaagaaacaccaccaataattgaaacctctttaagtgtgtgaaccaaagcatgacttaccttcat 37242223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 186 - 458
Target Start/End: Complemental strand, 34873737 - 34873478
Alignment:
Q  186 aaggtggcatttcacatgggaaggtataaaaccttcccactataggtcacacaagataaatggttagattatgcatttctattaaagcttatcatgttct 285  Q
    |||||||||||||||||||||||||||||||||||||||| || | ||||||||||||             |||||||||||||||||||||||||||||    
T  34873737 aaggtggcatttcacatgggaaggtataaaaccttcccaccatggatcacacaagatag------------tgcatttctattaaagcttatcatgttct 34873650  T
Q  286 cccacatctgatctcaatagcttcactttccaaacttttctcatcttgctcccaactttgtggccgtctccctccaggctccatctcccacaaccagcaa 385  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  34873649 cccacatctgatctcaatagcttcactttccaaacttttgtcatcttgctcccagctttgtggccgtctccctccaggctccatctcccacaaccagcaa 34873550  T
Q  386 ccaccttcaaagaaacaccaccaataattgaaacctctttaagtgtgtgaaccaaagcatgacttaccttcat 458  Q
    |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  34873549 ccaccttcaaagaaacaccaccaataattgaaacct-tttaagtgggtgaaccaaagcatgacttaccttcat 34873478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 187 - 280
Target Start/End: Original strand, 13809926 - 13810019
Alignment:
Q  187 aggtggcatttcacatgggaaggtataaaaccttcccactataggtcacacaagataaatggttagattatgcatttctattaaagcttatcat 280  Q
    ||||| ||||| | ||||||| | ||||||| || |||| || |||||||||||||||||||||| ||| |||| |||||||||||||||||||    
T  13809926 aggtgacatttaatatgggaaaggataaaacttttccaccatgggtcacacaagataaatggttacattgtgcacttctattaaagcttatcat 13810019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 188 - 225
Target Start/End: Original strand, 44445490 - 44445527
Alignment:
Q  188 ggtggcatttcacatgggaaggtataaaaccttcccac 225  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  44445490 ggtggcatttcacatgggaagatataaaaccttcccac 44445527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 188 - 224
Target Start/End: Original strand, 41638480 - 41638516
Alignment:
Q  188 ggtggcatttcacatgggaaggtataaaaccttccca 224  Q
    ||||||||||||||||||||||| |||||||||||||    
T  41638480 ggtggcatttcacatgggaaggtgtaaaaccttccca 41638516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 225
Target Start/End: Original strand, 34872964 - 34873002
Alignment:
Q  187 aggtggcatttcacatgggaaggtataaaaccttcccac 225  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  34872964 aggtggctgttcacatgggaaggtataaaaccttcccac 34873002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 225
Target Start/End: Complemental strand, 1259746 - 1259717
Alignment:
Q  196 ttcacatgggaaggtataaaaccttcccac 225  Q
    ||||||||||||||||||||||||||||||    
T  1259746 ttcacatgggaaggtataaaaccttcccac 1259717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 225
Target Start/End: Complemental strand, 37243034 - 37243005
Alignment:
Q  196 ttcacatgggaaggtataaaaccttcccac 225  Q
    ||||||||||||||||||||||||||||||    
T  37243034 ttcacatgggaaggtataaaaccttcccac 37243005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 188 - 458
Target Start/End: Complemental strand, 2320263 - 2319993
Alignment:
Q  188 ggtggcatttcacatgggaaggtataaaaccttcccactataggtcacacaagataaatggttagattatgcatttctattaaagcttatcatgttctcc 287  Q
    |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2320263 ggtggcatttcacatgggaaggtataaaaccttcccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcc 2320164  T
Q  288 cacatctgatctcaatagcttcactttccaaacttttctcatcttgctcccaactttgtggccgtctccctccaggctccatctcccacaaccagcaacc 387  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  2320163 cacatctgatctcaatagcttcactttccaaatttttctcatcttgctcccagctttgtggccgtctccctccaggctccatctcccacaaccagcaacc 2320064  T
Q  388 accttcaaagaaacaccaccaataattgaaacctctttaagtgtgtgaaccaaagcatgacttaccttcat 458  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2320063 accttcaaagaaacaccaccaataattgaaacctctttaagtgtgtgaaacaaagcatgacttaccttcat 2319993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 234 - 339
Target Start/End: Complemental strand, 38544328 - 38544223
Alignment:
Q  234 acacaagataaatggttagattatgcatttctattaaagcttatcatgttctcccacatctgatctcaatagcttcactttccaaacttttctcatcttg 333  Q
    ||||||||| |||||||||||| | || |||||||||| ||||||||| |||| |||| || ||   ||| | ||| | ||||||||||||||||||||     
T  38544328 acacaagatcaatggttagattgtacacttctattaaatcttatcatgctctctcacacctaattctaatggtttctcattccaaacttttctcatcttc 38544229  T
Q  334 ctccca 339  Q
    ||||||    
T  38544228 ctccca 38544223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 10382031 - 10382071
Alignment:
Q  188 ggtggcatttcacatgggaaggtataaaaccttcccactat 228  Q
    |||||||||||||||| ||||||||||||| ||||||||||    
T  10382031 ggtggcatttcacatgcgaaggtataaaacattcccactat 10382071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 225
Target Start/End: Original strand, 9484265 - 9484302
Alignment:
Q  188 ggtggcatttcacatgggaaggtataaaaccttcccac 225  Q
    ||||||||||||||| |||||||||||||| |||||||    
T  9484265 ggtggcatttcacattggaaggtataaaacattcccac 9484302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 188 - 458
Target Start/End: Complemental strand, 16990647 - 16990377
Alignment:
Q  188 ggtggcatttcacatgggaaggtataaaaccttcccactataggtcacacaagataaatggttagattatgcatttctattaaagcttatcatgttctcc 287  Q
    |||||||||||| |||||||||||||||||||| |||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  16990647 ggtggcatttcatatgggaaggtataaaacctttccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcc 16990548  T
Q  288 cacatctgatctcaatagcttcactttccaaacttttctcatcttgctcccaactttgtggccgtctccctccaggctccatctcccacaaccagcaacc 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  16990547 cacatctgatctcaatagcttcactttccaaacttttctcatcttgctcccagctttgtggccgtctccctccaggctccatctcccacaaccagcaacc 16990448  T
Q  388 accttcaaagaaacaccaccaataattgaaacctctttaagtgtgtgaaccaaagcatgacttaccttcat 458  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16990447 accttcaaagaaacaccaccaataattgaaacctctttaagtgtgtgaaccaaagcatgacttaccttcat 16990377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 186 - 231
Target Start/End: Original strand, 52720595 - 52720640
Alignment:
Q  186 aaggtggcatttcacatgggaaggtataaaaccttcccactatagg 231  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||    
T  52720595 aaggtggcatttcacatgggaaggtataaaacattcccaccatagg 52720640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 187 - 458
Target Start/End: Original strand, 31234115 - 31234386
Alignment:
Q  187 aggtggcatttcacatgggaaggtataaaaccttcccactataggtcacacaagataaatggttagattatgcatttctattaaagcttatcatgttctc 286  Q
    ||||||||||||| ||||||||||||||||||||||||| || | |||||||||||||||| ||||||| | ||||||||||||||||||||||||||||    
T  31234115 aggtggcatttcatatgggaaggtataaaaccttcccaccatggatcacacaagataaatgattagattgtacatttctattaaagcttatcatgttctc 31234214  T
Q  287 ccacatctgatctcaatagcttcactttccaaacttttctcatcttgctcccaactttgtggccgtctccctccaggctccatctcccacaaccagcaac 386  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  31234215 ctacatctgatctcaatagcttcactttccaaacttttctcatcttgctcccagctttgtggtcgtctccctccaggctccatctcccacaaccagcaac 31234314  T
Q  387 caccttcaaagaaacaccaccaataattgaaacctctttaagtgtgtgaaccaaagcatgacttaccttcat 458  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31234315 caccttcaaagaaacaccaccaataattgaaacctctttaagtgtgtgaaccaaagcatgacttaccttcat 31234386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 188 - 225
Target Start/End: Original strand, 41236789 - 41236826
Alignment:
Q  188 ggtggcatttcacatgggaaggtataaaaccttcccac 225  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  41236789 ggtggcatttcacatgggaaggtgtaaaaccttcccac 41236826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 196 - 230
Target Start/End: Complemental strand, 31235198 - 31235164
Alignment:
Q  196 ttcacatgggaaggtataaaaccttcccactatag 230  Q
    |||||||||||||||||||||||||||||| ||||    
T  31235198 ttcacatgggaaggtataaaaccttcccaccatag 31235164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 131; Significance: 9e-68; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 188 - 334
Target Start/End: Original strand, 18246177 - 18246323
Alignment:
Q  188 ggtggcatttcacatgggaaggtataaaaccttcccactataggtcacacaagataaatggttagattatgcatttctattaaagcttatcatgttctcc 287  Q
    |||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  18246177 ggtggcatttcacatgggaaggtataaaactttcccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcc 18246276  T
Q  288 cacatctgatctcaatagcttcactttccaaacttttctcatcttgc 334  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  18246277 cacatctgatctcaatagcttcactttccaaacttttctcatcttgc 18246323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 8e-28; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 219 - 330
Target Start/End: Complemental strand, 39087518 - 39087407
Alignment:
Q  219 ttcccactataggtcacacaagataaatggttagattatgcatttctattaaagcttatcatgttctcccacatctgatctcaatagcttcactttccaa 318  Q
    ||||||| |||| ||||| || ||||||||||||||| ||||||||||| ||| ||||||||||||||||||| || |||| ||| ||||| ||||||||    
T  39087518 ttcccaccatagatcacataaaataaatggttagattttgcatttctataaaaccttatcatgttctcccacacctaatcttaattgcttctctttccaa 39087419  T
Q  319 acttttctcatc 330  Q
    ||||||||||||    
T  39087418 acttttctcatc 39087407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 187 - 225
Target Start/End: Original strand, 3135922 - 3135960
Alignment:
Q  187 aggtggcatttcacatgggaaggtataaaaccttcccac 225  Q
    |||||||||||||||||||||||||||||||||||||||    
T  3135922 aggtggcatttcacatgggaaggtataaaaccttcccac 3135960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 189 - 225
Target Start/End: Original strand, 27645836 - 27645872
Alignment:
Q  189 gtggcatttcacatgggaaggtataaaaccttcccac 225  Q
    |||||||||||||||||||||| ||||||||||||||    
T  27645836 gtggcatttcacatgggaaggtgtaaaaccttcccac 27645872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 8e-25; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 51 - 113
Target Start/End: Original strand, 6090401 - 6090463
Alignment:
Q  51 aaataccgtaccagaaaagaaaaactgataatgatgtgtattcaatcaaaagaatgaaagata 113  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  6090401 aaataccgtaccagaaaagaaaaactgataatgatatgtattcaatcaaaagaatgaaagata 6090463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 240 - 330
Target Start/End: Complemental strand, 20040262 - 20040174
Alignment:
Q  240 gataaatggttagattatgcatttctattaaagcttatcatgttctcccacatctgatctcaatagcttcactttccaaacttttctcatc 330  Q
    |||||||||||||||| |||| |||||||||| ||||||||||||||||||| || |||| ||| ||||  || |||||||||||||||||    
T  20040262 gataaatggttagattgtgcacttctattaaatcttatcatgttctcccacacctaatcttaatggctt--ctctccaaacttttctcatc 20040174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 152 - 187
Target Start/End: Original strand, 6091092 - 6091127
Alignment:
Q  152 ataagttagcatagcaaaatgattcaaataaaagaa 187  Q
    ||||||||||||||||||||||||||||||||||||    
T  6091092 ataagttagcatagcaaaatgattcaaataaaagaa 6091127  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 225
Target Start/End: Original strand, 16043374 - 16043411
Alignment:
Q  188 ggtggcatttcacatgggaaggtataaaaccttcccac 225  Q
    |||||||||||||||||||||||||||| | |||||||    
T  16043374 ggtggcatttcacatgggaaggtataaagctttcccac 16043411  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 45320453 - 45320493
Alignment:
Q  185 gaaggtggcatttcacatgggaaggtataaaaccttcccac 225  Q
    |||||||||  ||||||||||||||||||||||||||||||    
T  45320453 gaaggtggctgttcacatgggaaggtataaaaccttcccac 45320493  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 225
Target Start/End: Complemental strand, 33284545 - 33284507
Alignment:
Q  187 aggtggcatttcacatgggaaggtataaaaccttcccac 225  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  33284545 aggtggcatttcacatgggagagtataaaaccttcccac 33284507  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 225
Target Start/End: Original strand, 41465235 - 41465273
Alignment:
Q  187 aggtggcatttcacatgggaaggtataaaaccttcccac 225  Q
    ||||||| |||||||||||||||| ||||||||||||||    
T  41465235 aggtggcttttcacatgggaaggtgtaaaaccttcccac 41465273  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 225
Target Start/End: Original strand, 41466221 - 41466250
Alignment:
Q  196 ttcacatgggaaggtataaaaccttcccac 225  Q
    ||||||||||||||||||||||||||||||    
T  41466221 ttcacatgggaaggtataaaaccttcccac 41466250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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