View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4171_low_4 (Length: 417)
Name: NF4171_low_4
Description: NF4171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4171_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 18 - 220
Target Start/End: Complemental strand, 2588237 - 2588048
Alignment:
| Q |
18 |
ttaatttggaaaaattgaagtatttatttgttgcgtacaatgacgataagaggtactagtagagtagtagtacacgtatacgaggcaacaagttcccaga |
117 |
Q |
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| T |
2588237 |
ttaatttggaaaaattgaagtattt----gttgcgtacaatcacgataagagagactagtagagtagtagtacacgtatacgaggcaacaagttccgaga |
2588142 |
T |
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| Q |
118 |
agaataagaatctatgnnnnnnnngtttatcacactcactcactcactcacatgcaatcatgcatacagctaactaactctgtagcatgcagttgatagt |
217 |
Q |
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| T |
2588141 |
agaatcagaatgtatg-tttttttgtttatca--------cactcactcacatgcaatcatgcatacagctaactaactctgtagcatgcagttggtagt |
2588051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 286 - 335
Target Start/End: Complemental strand, 2587985 - 2587936
Alignment:
| Q |
286 |
aacaacagagtcagcttttgtttaaatttaatcaaacaaacaccacacac |
335 |
Q |
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| T |
2587985 |
aacaacagagtcagcttttgtttaaatttaatcaaacaaacaccacacac |
2587936 |
T |
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