View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4171_low_5 (Length: 405)

Name: NF4171_low_5
Description: NF4171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4171_low_5
NF4171_low_5
[»] chr7 (5 HSPs)
chr7 (28-360)||(25673878-25674210)
chr7 (164-299)||(8247011-8247146)
chr7 (164-317)||(341416-341569)
chr7 (178-299)||(20123992-20124113)
chr7 (219-317)||(26457681-26457779)
[»] chr1 (8 HSPs)
chr1 (164-299)||(11659104-11659239)
chr1 (164-299)||(3617741-3617876)
chr1 (164-299)||(18536093-18536228)
chr1 (164-299)||(37360069-37360204)
chr1 (164-297)||(31094062-31094195)
chr1 (164-250)||(11442598-11442684)
chr1 (164-224)||(146411-146471)
chr1 (178-298)||(26027727-26027847)
[»] scaffold0014 (1 HSPs)
scaffold0014 (164-299)||(110776-110911)
[»] chr8 (3 HSPs)
chr8 (164-299)||(30715339-30715474)
chr8 (164-315)||(29542298-29542449)
chr8 (164-299)||(30723117-30723252)
[»] chr5 (4 HSPs)
chr5 (164-299)||(21172309-21172444)
chr5 (164-299)||(35265664-35265799)
chr5 (152-299)||(17943615-17943763)
chr5 (192-299)||(24224230-24224337)
[»] chr4 (8 HSPs)
chr4 (164-299)||(12660309-12660444)
chr4 (164-299)||(1875118-1875253)
chr4 (164-299)||(16326837-16326972)
chr4 (164-299)||(30674823-30674958)
chr4 (216-297)||(13998967-13999048)
chr4 (166-299)||(25692294-25692427)
chr4 (178-293)||(26996168-26996283)
chr4 (164-299)||(23192988-23193123)
[»] chr2 (5 HSPs)
chr2 (164-317)||(25446182-25446335)
chr2 (164-299)||(16444392-16444527)
chr2 (164-299)||(43288512-43288647)
chr2 (166-253)||(17320673-17320760)
chr2 (195-299)||(11311048-11311152)
[»] chr3 (4 HSPs)
chr3 (164-260)||(17032148-17032244)
chr3 (164-299)||(15753618-15753753)
chr3 (164-298)||(49487847-49487981)
chr3 (164-293)||(21882331-21882460)
[»] chr6 (1 HSPs)
chr6 (152-299)||(17271115-17271262)
[»] scaffold0062 (3 HSPs)
scaffold0062 (164-296)||(18928-19060)
scaffold0062 (164-296)||(29096-29228)
scaffold0062 (164-296)||(39085-39217)


Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-159; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 28 - 360
Target Start/End: Original strand, 25673878 - 25674210
Alignment:
Q  28 tatgtttaatgtatgtatgtttatgttgttttaaaatttgattgtctgagaaaataaagagagttattcatttttaattaagtcatctctttggtagttt 127  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  25673878 tatgtttaatgtatgtatgtttatgttcttttaaaatttgattgtctgagaaaataaatagagttattcatttttaattaagtcatctctttggtagttt 25673977  T
Q  128 gaataatatgtcttacagtattttaatccttcgagaagtttcatataatcatcaccatcaaataagtcatacaaatatgttctaacatatctttcatgta 227  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||    
T  25673978 gaataatatgtctcacagtattttaatccttcgagaagtttcatataatcatcaccatcaaataaatcatacaaatatgttctaacatatctttcatata 25674077  T
Q  228 aattaagtctttcatgtggtactaaatttaatccagcacaaaaaagtttttaaatttacttcaggtgaatatattacttaaaaataaatgacaaactgtt 327  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  25674078 aattaagtctttcatgtggtactaaatttaatccagcacgaaaaagtttttaaatttacttcaagtgaatatatcacttaaaaataaatgacaaactgtt 25674177  T
Q  328 accggttcacttaaaggattatatcaaattatc 360  Q
    ||| ||||||||||||||  |||||||| ||||    
T  25674178 acctgttcacttaaaggaacatatcaaactatc 25674210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 164 - 299
Target Start/End: Complemental strand, 8247146 - 8247011
Alignment:
Q  164 agtttcatataatcatcaccatcaaataagtcatacaaatatgttctaacatatctttcatgtaaattaagtctttcatgtggtactaaatttaatccag 263  Q
    ||||||||||| ||||||| ||||  | |||||||||| ||| ||  |||| ||||||||| |||||| ||||||||||||  ||||||| |||||| ||    
T  8247146 agtttcatatactcatcactatcatgtgagtcatacaactatattgcaacacatctttcatataaattgagtctttcatgtaatactaaacttaatcaag 8247047  T
Q  264 cacaaaaaagtttttaaatttacttcaggtgaatat 299  Q
    ||  |||||||| || |||| ||||||||| |||||    
T  8247046 caagaaaaagttcttgaattaacttcaggtaaatat 8247011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 164 - 317
Target Start/End: Original strand, 341416 - 341569
Alignment:
Q  164 agtttcatataatcatcaccatcaaataagtcatacaaatatgttctaacatatctttcatgtaaattaagtctttcatgtggtactaaatttaatccag 263  Q
    ||||||||||| |||| || ||||  | |||||||||| ||| ||  |||| ||||||||| |||||| || |||||||||  ||||||| |||||| ||    
T  341416 agtttcatatactcattactatcacgtgagtcatacaactatattgcaacacatctttcatataaattgagcctttcatgtaatactaaacttaatcaag 341515  T
Q  264 cacaaaaaagtttttaaatttacttcaggtgaatatattacttaaaaataaatg 317  Q
    ||  |||||||| || |||| ||||||||| ||||| |  |||||| |||||||    
T  341516 caagaaaaagttcttgaattcacttcaggtaaatatgtctcttaaacataaatg 341569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 178 - 299
Target Start/End: Complemental strand, 20124113 - 20123992
Alignment:
Q  178 atcaccatcaaataagtcatacaaatatgttctaacatatctttcatgtaaattaagtctttcatgtggtactaaatttaatccagcacaaaaaagtttt 277  Q
    ||||| ||||| | || |||| |||||| || ||||| ||||||||| ||| || || |||||||||| |||| || |||||| || || |||||||| |    
T  20124113 atcactatcaagtgagccatataaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtacgaaaaagttct 20124014  T
Q  278 taaatttacttcaggtgaatat 299  Q
    | ||||  ||||||||||||||    
T  20124013 tgaattcccttcaggtgaatat 20123992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 317
Target Start/End: Original strand, 26457681 - 26457779
Alignment:
Q  219 tttcatgtaaattaagtctttcatgtggtactaaatttaatccagcacaaaaaagtttttaaatttacttcaggtgaatatattacttaaaaataaatg 317  Q
    |||||| |||||| ||||||||||||| ||||||| |||||| ||||  ||||| |  || || | ||||||||||||||| |  |||||| |||||||    
T  26457681 tttcatataaattgagtctttcatgtgatactaaacttaatcaagcaagaaaaattccttgaactcacttcaggtgaatatgtctcttaaacataaatg 26457779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 164 - 299
Target Start/End: Complemental strand, 11659239 - 11659104
Alignment:
Q  164 agtttcatataatcatcaccatcaaataagtcatacaaatatgttctaacatatctttcatgtaaattaagtctttcatgtggtactaaatttaatccag 263  Q
    ||||||||||| ||||||| ||||  | | |||||||| ||| ||  |||| ||||||||| |||||| || |||||||||  ||||||| |||||| ||    
T  11659239 agtttcatatattcatcactatcacgtgattcatacaactatattgcaacacatctttcatataaattgagcctttcatgtaatactaaacttaatcaag 11659140  T
Q  264 cacaaaaaagtttttaaatttacttcaggtgaatat 299  Q
    ||  ||||||||||| |||||||||||||| |||||    
T  11659139 caagaaaaagtttttgaatttacttcaggtaaatat 11659104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 164 - 299
Target Start/End: Original strand, 3617741 - 3617876
Alignment:
Q  164 agtttcatataatcatcaccatcaaataagtcatacaaatatgttctaacatatctttcatgtaaattaagtctttcatgtggtactaaatttaatccag 263  Q
    ||||||||||||||| ||| ||||| | || ||||||||||| || || || |||| |||| ||| || || |||||||||| |||| || |||||||||    
T  3617741 agtttcatataatcaccacaatcaagtgagccatacaaatatattgtagcacatctatcatataatttgagcctttcatgtgctactcaacttaatccag 3617840  T
Q  264 cacaaaaaagtttttaaatttacttcaggtgaatat 299  Q
     |  |||||||| || |||| |||||||||||||||    
T  3617841 tatgaaaaagttattgaattcacttcaggtgaatat 3617876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 164 - 299
Target Start/End: Original strand, 18536093 - 18536228
Alignment:
Q  164 agtttcatataatcatcaccatcaaataagtcatacaaatatgttctaacatatctttcatgtaaattaagtctttcatgtggtactaaatttaatccag 263  Q
    ||||||||||| ||||||| ||||  | |||||||||| ||| ||  |||| ||||||||| |||||| || |||||||||  ||||||| |||||| ||    
T  18536093 agtttcatatactcatcactatcatgtgagtcatacaactatattgcaacacatctttcatataaattgagcctttcatgtaatactaaacttaatcaag 18536192  T
Q  264 cacaaaaaagtttttaaatttacttcaggtgaatat 299  Q
    ||  |||||||| || |||| ||||||||| |||||    
T  18536193 caagaaaaagttcttgaattcacttcaggtaaatat 18536228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 164 - 299
Target Start/End: Original strand, 37360069 - 37360204
Alignment:
Q  164 agtttcatataatcatcaccatcaaataagtcatacaaatatgttctaacatatctttcatgtaaattaagtctttcatgtggtactaaatttaatccag 263  Q
    ||||||||||| ||||||| ||||  | |||||||||| ||| ||  |||| ||||||||| |||||| || |||||||||  ||||||| |||||| ||    
T  37360069 agtttcatatactcatcactatcacgtgagtcatacaactatattgcaacacatctttcatataaattgagcctttcatgtaatactaaacttaatcaag 37360168  T
Q  264 cacaaaaaagtttttaaatttacttcaggtgaatat 299  Q
    ||  |||||||| || |||| ||||||||| |||||    
T  37360169 caagaaaaagttcttgaattaacttcaggtaaatat 37360204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 297
Target Start/End: Original strand, 31094062 - 31094195
Alignment:
Q  164 agtttcatataatcatcaccatcaaataagtcatacaaatatgttctaacatatctttcatgtaaattaagtctttcatgtggtactaaatttaatccag 263  Q
    ||||||||||| || |||| ||||  | |||||||||| ||| ||  |||| ||||||||| |||||| || |||||||||  ||||||| |||||| ||    
T  31094062 agtttcatatactcgtcactatcacgtgagtcatacaactatattgcaacacatctttcatataaattgagcctttcatgtaatactaaacttaatcaag 31094161  T
Q  264 cacaaaaaagtttttaaatttacttcaggtgaat 297  Q
    ||  |||||||| || || | |||||||||||||    
T  31094162 caagaaaaagttcttgaaatcacttcaggtgaat 31094195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 250
Target Start/End: Original strand, 11442598 - 11442684
Alignment:
Q  164 agtttcatataatcatcaccatcaaataagtcatacaaatatgttctaacatatctttcatgtaaattaagtctttcatgtggtact 250  Q
    ||||| ||||||||||||| ||||| | |||||||||||||| || || || |||||| || ||| || ||||||||||||| ||||    
T  11442598 agtttaatataatcatcactatcaagtgagtcatacaaatatattttagcacatcttttatataatttgagtctttcatgtgctact 11442684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 224
Target Start/End: Original strand, 146411 - 146471
Alignment:
Q  164 agtttcatataatcatcaccatcaaataagtcatacaaatatgttctaacatatctttcat 224  Q
    ||||| ||||||||||||| ||||| |||||||||||||||| || || || |||||||||    
T  146411 agtttaatataatcatcactatcaagtaagtcatacaaatatattatagcaaatctttcat 146471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 298
Target Start/End: Complemental strand, 26027847 - 26027727
Alignment:
Q  178 atcaccatcaaataagtcatacaaatatgttctaacatatctttcatgtaaattaagtctttcatgtggtactaaatttaatccagcacaaaaaagtttt 277  Q
    ||||| ||||| | |||||||||||||| || || || ||||||||| ||| || || |||||||||| || | || |||||| || |  |||||||| |    
T  26027847 atcactatcaagtgagtcatacaaatatattgtagcacatctttcatataatttgagcctttcatgtgctattgaacttaatcaagtatgaaaaagttct 26027748  T
Q  278 taaatttacttcaggtgaata 298  Q
    | |||| ||||||||||||||    
T  26027747 tgaattcacttcaggtgaata 26027727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 164 - 299
Target Start/End: Complemental strand, 110911 - 110776
Alignment:
Q  164 agtttcatataatcatcaccatcaaataagtcatacaaatatgttctaacatatctttcatgtaaattaagtctttcatgtggtactaaatttaatccag 263  Q
    ||||||||||| ||||||| ||||  | |||||||||| ||| ||  |||| ||||||||| |||||| || |||||||||  ||||||| |||||| ||    
T  110911 agtttcatatactcatcactatcacgtgagtcatacaactatattgcaacacatctttcatataaattgagcctttcatgtaatactaaacttaatcaag 110812  T
Q  264 cacaaaaaagtttttaaatttacttcaggtgaatat 299  Q
    ||  |||||||| || |||| ||||||||| |||||    
T  110811 caagaaaaagttcttgaattaacttcaggtaaatat 110776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 164 - 299
Target Start/End: Original strand, 30715339 - 30715474
Alignment:
Q  164 agtttcatataatcatcaccatcaaataagtcatacaaatatgttctaacatatctttcatgtaaattaagtctttcatgtggtactaaatttaatccag 263  Q
    ||||||||||| ||||||| ||||  | |||||||||| ||| ||  |||| ||||||||| |||||| || |||||||||  ||||||| |||||| ||    
T  30715339 agtttcatatactcatcactatcacgtgagtcatacaactatattgcaacacatctttcatataaattgagcctttcatgtaatactaaacttaatcaag 30715438  T
Q  264 cacaaaaaagtttttaaatttacttcaggtgaatat 299  Q
    ||  |||||||| || |||| ||||||||| |||||    
T  30715439 caagaaaaagttcttgaattaacttcaggtaaatat 30715474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 164 - 315
Target Start/End: Complemental strand, 29542449 - 29542298
Alignment:
Q  164 agtttcatataatcatcaccatcaaataagtcatacaaatatgttctaacatatctttcatgtaaattaagtctttcatgtggtactaaatttaatccag 263  Q
    ||||||||||| ||||||| ||||  |  ||||||||| ||| ||  || | || |||||| |||||| ||||||||||||| ||||||| |||||| ||    
T  29542449 agtttcatatactcatcactatcatgtgggtcatacaactatattgcaatacatttttcatataaattgagtctttcatgtgatactaaacttaatcaag 29542350  T
Q  264 cacaaaaaagtttttaaatttacttcaggtgaatatattacttaaaaataaa 315  Q
     |  |||||||| || |||| | |||||||||||||||  |||||| |||||    
T  29542349 taagaaaaagttcttgaattcatttcaggtgaatatatctcttaaacataaa 29542298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 164 - 299
Target Start/End: Original strand, 30723117 - 30723252
Alignment:
Q  164 agtttcatataatcatcaccatcaaataagtcatacaaatatgttctaacatatctttcatgtaaattaagtctttcatgtggtactaaatttaatccag 263  Q
    ||||||||||| || |||| ||||  | |||||||||| ||| ||  |||| ||||||||| |||||| || |||||||||  ||||||| |||||| ||    
T  30723117 agtttcatatactcgtcactatcacgtgagtcatacaactatattgcaacacatctttcatataaattgagcctttcatgtaatactaaacttaatcaag 30723216  T
Q  264 cacaaaaaagtttttaaatttacttcaggtgaatat 299  Q
    ||  |||||||| || || | |||||||||||||||    
T  30723217 caagaaaaagttcttgaaatcacttcaggtgaatat 30723252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 164 - 299
Target Start/End: Original strand, 21172309 - 21172444
Alignment:
Q  164 agtttcatataatcatcaccatcaaataagtcatacaaatatgttctaacatatctttcatgtaaattaagtctttcatgtggtactaaatttaatccag 263  Q
    ||||||||||| ||||||| ||||  | |||||||||| ||| ||  |||| ||||||||| |||||| || |||||||||  ||||||| |||||| ||    
T  21172309 agtttcatatactcatcactatcacgtgagtcatacaactatattgcaacacatctttcatataaatttagcctttcatgtaatactaaacttaatcaag 21172408  T
Q  264 cacaaaaaagtttttaaatttacttcaggtgaatat 299  Q
    ||  |||||||| || |||| ||||||||| |||||    
T  21172409 caagaaaaagttattgaattaacttcaggtaaatat 21172444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 164 - 299
Target Start/End: Original strand, 35265664 - 35265799
Alignment:
Q  164 agtttcatataatcatcaccatcaaataagtcatacaaatatgttctaacatatctttcatgtaaattaagtctttcatgtggtactaaatttaatccag 263  Q
    ||||||||||| ||||||| ||||  | |||||||||| ||| ||  |||| ||||||||| |||||| || ||||||||| |||||||| |||||| ||    
T  35265664 agtttcatatactcatcactatcacgtgagtcatacaactatattgcaacacatctttcatataaattgagcctttcatgtagtactaaacttaatcaag 35265763  T
Q  264 cacaaaaaagtttttaaatttacttcaggtgaatat 299  Q
    ||  |||| ||| || |||| ||||||||| |||||    
T  35265764 caagaaaaggttcttgaattaacttcaggtaaatat 35265799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 299
Target Start/End: Complemental strand, 17943763 - 17943615
Alignment:
Q  152 aatccttcgagaagtttcatataatcatcacc-atcaaataagtcatacaaatatgttctaacatatctttcatgtaaattaagtctttcatgtggtact 250  Q
    |||| |||| |||||||||||||| ||||| | ||||| | || ||||||||||  || ||||| ||||||||| ||| || ||  ||||||||| |||     
T  17943763 aatcattcgggaagtttcatataaccatcaactatcaagtgagccatacaaataaattgtaacacatctttcatataatttgagcatttcatgtgctacc 17943664  T
Q  251 aaatttaatccagcacaaaaaagtttttaaatttacttcaggtgaatat 299  Q
     || |||||| |  |  ||||||||||| |||| |||||||||||||||    
T  17943663 gaacttaatcaactatgaaaaagtttttgaattcacttcaggtgaatat 17943615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 192 - 299
Target Start/End: Original strand, 24224230 - 24224337
Alignment:
Q  192 agtcatacaaatatgttctaacatatctttcatgtaaattaagtctttcatgtggtactaaatttaatccagcacaaaaaagtttttaaatttacttcag 291  Q
    ||||||| |||||  || ||||| ||||||||| ||| |||||  ||||||||| || | || |||||| || |  |||||||| ||||||| |||||||    
T  24224230 agtcatataaataaattgtaacacatctttcatataatttaagcatttcatgtgctaatgaacttaatcaagtatgaaaaagttcttaaattcacttcag 24224329  T
Q  292 gtgaatat 299  Q
    ||||||||    
T  24224330 gtgaatat 24224337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 164 - 299
Target Start/End: Original strand, 12660309 - 12660444
Alignment:
Q  164 agtttcatataatcatcaccatcaaataagtcatacaaatatgttctaacatatctttcatgtaaattaagtctttcatgtggtactaaatttaatccag 263  Q
    ||||||||||| ||||||| ||||  | |||||||||| ||| ||  |||| ||||||||| |||||| || |||||||||  ||||||| |||||| ||    
T  12660309 agtttcatatactcatcactatcacgtgagtcatacaactatattgcaacacatctttcatataaattgagcctttcatgtaatactaaacttaatcaag 12660408  T
Q  264 cacaaaaaagtttttaaatttacttcaggtgaatat 299  Q
    ||  |||||||| || |||| ||||||||| |||||    
T  12660409 caagaaaaagttcttgaattaacttcaggtaaatat 12660444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 164 - 299
Target Start/End: Original strand, 1875118 - 1875253
Alignment:
Q  164 agtttcatataatcatcaccatcaaataagtcatacaaatatgttctaacatatctttcatgtaaattaagtctttcatgtggtactaaatttaatccag 263  Q
    ||||||||||| ||||||| ||||  | |||||||||| ||| ||  |||| ||||||||| |||||| || |||||||||  ||||||| |||||| ||    
T  1875118 agtttcatatactcatcactatcacgtgagtcatacaactatattgcaacacatctttcatataaattgagcctttcatgtaatactaaacttaatcaag 1875217  T
Q  264 cacaaaaaagtttttaaatttacttcaggtgaatat 299  Q
    ||  |||| ||| || |||| ||||||||| |||||    
T  1875218 caagaaaaggttcttgaattaacttcaggtaaatat 1875253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 164 - 299
Target Start/End: Original strand, 16326837 - 16326972
Alignment:
Q  164 agtttcatataatcatcaccatcaaataagtcatacaaatatgttctaacatatctttcatgtaaattaagtctttcatgtggtactaaatttaatccag 263  Q
    ||||||||||| ||||||| ||||  | |||||||||  ||| ||  |||| ||||||||| |||||| || |||||||||  ||||||| |||||| ||    
T  16326837 agtttcatatactcatcactatcacgtgagtcatacagctatattgcaacacatctttcatataaattgagcctttcatgtaatactaaacttaatcaag 16326936  T
Q  264 cacaaaaaagtttttaaatttacttcaggtgaatat 299  Q
    ||  |||||||| || |||| ||||||||| |||||    
T  16326937 caagaaaaagttcttgaattaacttcaggtaaatat 16326972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 164 - 299
Target Start/End: Original strand, 30674823 - 30674958
Alignment:
Q  164 agtttcatataatcatcaccatcaaataagtcatacaaatatgttctaacatatctttcatgtaaattaagtctttcatgtggtactaaatttaatccag 263  Q
    ||||||||||| ||||||| ||||  | |||||||| | ||| ||  |||| ||||||||| |||||| || |||||||||  ||||||| |||||| ||    
T  30674823 agtttcatatactcatcactatcacgtgagtcatacgactatattgcaacacatctttcatataaattgagcctttcatgtaatactaaacttaatcaag 30674922  T
Q  264 cacaaaaaagtttttaaatttacttcaggtgaatat 299  Q
    ||  |||||||| || |||| ||||||||| |||||    
T  30674923 caagaaaaagttcttgaattaacttcaggtaaatat 30674958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 297
Target Start/End: Complemental strand, 13999048 - 13998967
Alignment:
Q  216 atctttcatgtaaattaagtctttcatgtggtactaaatttaatccagcacaaaaaagtttttaaatttacttcaggtgaat 297  Q
    ||||||||| ||| || ||||||||||||| |||| ||||||||| || |  |||||||| || ||||||||||||||||||    
T  13999048 atctttcatataatttgagtctttcatgtgctactgaatttaatcaagtatgaaaaagttcttgaatttacttcaggtgaat 13998967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 299
Target Start/End: Original strand, 25692294 - 25692427
Alignment:
Q  166 tttcatataatcatcaccatcaaataagtcatacaaatatgttctaacatatctttcatgtaaattaagtctttcatgtggtactaaatttaatccagca 265  Q
    ||||||||| || |||| ||||  | |||||||||| ||| ||  |||| ||||||||| |||||| || |||||||||  ||||||| |||||| ||||    
T  25692294 tttcatatactcgtcactatcacgtgagtcatacaactatattgcaacacatctttcatataaattgagcctttcatgtaatactaaacttaatcaagca 25692393  T
Q  266 caaaaaagtttttaaatttacttcaggtgaatat 299  Q
      |||||||| || || | |||||||||||||||    
T  25692394 agaaaaagttcttgaaatcacttcaggtgaatat 25692427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 178 - 293
Target Start/End: Complemental strand, 26996283 - 26996168
Alignment:
Q  178 atcaccatcaaataagtcatacaaatatgttctaacatatctttcatgtaaattaagtctttcatgtggtactaaatttaatccagcacaaaaaagtttt 277  Q
    ||||| ||||| | ||||||| |||||  || ||||| ||||||||| ||| || ||||||||||||| |||| || |||||| ||||  |||||||| |    
T  26996283 atcactatcaagtgagtcatataaataaattgtaacacatctttcatataatttgagtctttcatgtgctactgaacttaatcaagcatgaaaaagttct 26996184  T
Q  278 taaatttacttcaggt 293  Q
    | |||| |||||||||    
T  26996183 tgaattcacttcaggt 26996168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 164 - 299
Target Start/End: Complemental strand, 23193123 - 23192988
Alignment:
Q  164 agtttcatataatcatcaccatcaaataagtcatacaaatatgttctaacatatctttcatgtaaattaagtctttcatgtggtactaaatttaatccag 263  Q
    ||||||||||| ||||||  ||||  | |||||||||| ||| ||  |||| ||||||||| |||||| || |||||||||  ||||||| || ||| |     
T  23193123 agtttcatatactcatcattatcacgtgagtcatacaactatattgcaacacatctttcatataaattgagcctttcatgtaatactaaactttatcaat 23193024  T
Q  264 cacaaaaaagtttttaaatttacttcaggtgaatat 299  Q
    ||  |||||||| || |||| ||||||||| |||||    
T  23193023 caagaaaaagttcttgaattcacttcaggtaaatat 23192988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 164 - 317
Target Start/End: Original strand, 25446182 - 25446335
Alignment:
Q  164 agtttcatataatcatcaccatcaaataagtcatacaaatatgttctaacatatctttcatgtaaattaagtctttcatgtggtactaaatttaatccag 263  Q
    |||||||||||  |||||| ||||  | |||||||||| ||| ||  |||| ||||||||| |||||| ||||||||||||  || |||| |||||| ||    
T  25446182 agtttcatatacccatcactatcacgtgagtcatacaactatattgcaacacatctttcatataaattgagtctttcatgtaatattaaacttaatcaag 25446281  T
Q  264 cacaaaaaagtttttaaatttacttcaggtgaatatattacttaaaaataaatg 317  Q
    ||  |||||||| || |||| ||||||||| ||||| |  |||||| |||||||    
T  25446282 caagaaaaagttcttgaattaacttcaggtaaatatgtctcttaaacataaatg 25446335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 164 - 299
Target Start/End: Original strand, 16444392 - 16444527
Alignment:
Q  164 agtttcatataatcatcaccatcaaataagtcatacaaatatgttctaacatatctttcatgtaaattaagtctttcatgtggtactaaatttaatccag 263  Q
    ||||| ||||||||||||| ||||| | || ||||||||||| || || || |||||| || ||| || || |||||||||| |||| || |||||| ||    
T  16444392 agtttaatataatcatcactatcaagtgagccatacaaatatattgtagcacatcttttatataatttgagcctttcatgtgctactgaacttaatcaag 16444491  T
Q  264 cacaaaaaagtttttaaatttacttcaggtgaatat 299  Q
     |  |||||||| || |||| |||||||||||||||    
T  16444492 tatgaaaaagttcttgaattcacttcaggtgaatat 16444527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 164 - 299
Target Start/End: Original strand, 43288512 - 43288647
Alignment:
Q  164 agtttcatataatcatcaccatcaaataagtcatacaaatatgttctaacatatctttcatgtaaattaagtctttcatgtggtactaaatttaatccag 263  Q
    ||||||||||| ||||||| ||||  | |||||||||| ||| ||  |||| ||||||||| |||||| || |||||||||  ||||||| || ||| ||    
T  43288512 agtttcatatactcatcactatcacgtgagtcatacaactatattgcaacacatctttcatataaattgagcctttcatgtaatactaaacttcatcaag 43288611  T
Q  264 cacaaaaaagtttttaaatttacttcaggtgaatat 299  Q
    ||  |||||||| || |||| ||||||||| |||||    
T  43288612 caagaaaaagttcttgaattcacttcaggtaaatat 43288647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 166 - 253
Target Start/End: Original strand, 17320673 - 17320760
Alignment:
Q  166 tttcatataatcatcaccatcaaataagtcatacaaatatgttctaacatatctttcatgtaaattaagtctttcatgtggtactaaa 253  Q
    ||||||||| |||| || ||||  | |||||||||||||| ||  |||| ||||||||| |||| | ||||||||||||| |||||||    
T  17320673 tttcatatactcattactatcatgtgagtcatacaaatatattacaacacatctttcatttaaaatgagtctttcatgtgctactaaa 17320760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 195 - 299
Target Start/End: Complemental strand, 11311152 - 11311048
Alignment:
Q  195 catacaaatatgttctaacatatctttcatgtaaattaagtctttcatgtggtactaaatttaatccagcacaaaaaagtttttaaatttacttcaggtg 294  Q
    ||||||||||| || || || ||||||||| ||| || ||| ||||||||| |||| || |||||| || |  |||||| | || |||| ||||||||||    
T  11311152 catacaaatatattatagcacatctttcatataatttgagtatttcatgtgctactgaacttaatcaagtatgaaaaagatcttgaattcacttcaggtg 11311053  T
Q  295 aatat 299  Q
    |||||    
T  11311052 aatat 11311048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 164 - 260
Target Start/End: Complemental strand, 17032244 - 17032148
Alignment:
Q  164 agtttcatataatcatcaccatcaaataagtcatacaaatatgttctaacatatctttcatgtaaattaagtctttcatgtggtactaaatttaatc 260  Q
    |||||||||||| |||||| ||||| | || ||||||||||  || ||||| ||||||||| ||| || ||||||||||||| ||||||| ||||||    
T  17032244 agtttcatataaccatcactatcaagtgagccatacaaataacttgtaacacatctttcatataatttgagtctttcatgtgctactaaacttaatc 17032148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 164 - 299
Target Start/End: Original strand, 15753618 - 15753753
Alignment:
Q  164 agtttcatataatcatcaccatcaaataagtcatacaaatatgttctaacatatctttcatgtaaattaagtctttcatgtggtactaaatttaatccag 263  Q
    ||||||||||| ||||||| ||||  | |||||||||| ||| ||  |||| ||||||||| |||||| || |||||||||  ||||||| ||||||  |    
T  15753618 agtttcatatactcatcactatcacgtgagtcatacaattatattgcaacacatctttcatataaattgagcctttcatgtaatactaaacttaatcatg 15753717  T
Q  264 cacaaaaaagtttttaaatttacttcaggtgaatat 299  Q
    ||  |||||||| || |||| ||||||||| |||||    
T  15753718 caagaaaaagttcttgaattaacttcaggtaaatat 15753753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 164 - 298
Target Start/End: Original strand, 49487847 - 49487981
Alignment:
Q  164 agtttcatataatcatcaccatcaaataagtcatacaaatatgttctaacatatctttcatgtaaattaagtctttcatgtggtactaaatttaatccag 263  Q
    ||||||||||| ||||||| ||||  | |||||||||| ||| ||  |||| ||||||||| |||||| || ||| |||||  ||||||| |||||| ||    
T  49487847 agtttcatatactcatcactatcacgtgagtcatacaactatattgcaacacatctttcatataaattgagccttccatgtaatactaaacttaatcaag 49487946  T
Q  264 cacaaaaaagtttttaaatttacttcaggtgaata 298  Q
    ||  |||||||| || |||| ||||||||| ||||    
T  49487947 caagaaaaagttcttgaattcacttcaggtaaata 49487981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 293
Target Start/End: Complemental strand, 21882460 - 21882331
Alignment:
Q  164 agtttcatataatcatcaccatcaaataagtcatacaaatatgttctaacatatctttcatgtaaattaagtctttcatgtggtactaaatttaatccag 263  Q
    ||||||||||| |||| || ||||  | |||||||||| ||| ||  |||| ||||||||| |||||| || |||||||||  ||||||| |||||| ||    
T  21882460 agtttcatatactcattactatcacgtgagtcatacaactatattgcaacacatctttcatataaattgagcctttcatgtaatactaaacttaatcaag 21882361  T
Q  264 cacaaaaaagtttttaaatttacttcaggt 293  Q
    ||  |||||||| || |||| |||||||||    
T  21882360 caagaaaaagttcttgaattcacttcaggt 21882331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 152 - 299
Target Start/End: Original strand, 17271115 - 17271262
Alignment:
Q  152 aatccttcgagaagtttcatataatcatcaccatcaaataagtcatacaaatatgttctaacatatctttcatgtaaattaagtctttcatgtggtacta 251  Q
    ||||||||| | |||||||||||| |||||| ||||| | |  ||||||||||  || ||||| ||||||||| ||| || || |||||||||| ||||     
T  17271115 aatccttcggggagtttcatataaccatcactatcaagtgaaccatacaaataaattgtaacacatctttcatataatttgagcctttcatgtgctactg 17271214  T
Q  252 aatttaatccagcacaaaaaagtttttaaatttacttcaggtgaatat 299  Q
    || |||||| || |  |||||||| || |||| |||||| ||||||||    
T  17271215 aacttaatcaagtatgaaaaagttcttgaattcacttcaagtgaatat 17271262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 164 - 296
Target Start/End: Complemental strand, 19060 - 18928
Alignment:
Q  164 agtttcatataatcatcaccatcaaataagtcatacaaatatgttctaacatatctttcatgtaaattaagtctttcatgtggtactaaatttaatccag 263  Q
    ||||| ||||||||||||| ||||| | || ||||||||||| || || || || ||| || ||| || || |||||||||| ||||||| |||||| ||    
T  19060 agtttgatataatcatcactatcaagtgagccatacaaatatattgtagcacattttttatataatttgagcctttcatgtgctactaaacttaatcaag 18961  T
Q  264 cacaaaaaagtttttaaatttacttcaggtgaa 296  Q
     |  |||||||| || |||| ||||||||||||    
T  18960 tatgaaaaagttcttgaattcacttcaggtgaa 18928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 164 - 296
Target Start/End: Complemental strand, 29228 - 29096
Alignment:
Q  164 agtttcatataatcatcaccatcaaataagtcatacaaatatgttctaacatatctttcatgtaaattaagtctttcatgtggtactaaatttaatccag 263  Q
    ||||| ||||||||||||| ||||| | || ||||||||||| || || || || ||| || ||| || || |||||||||| ||||||| |||||| ||    
T  29228 agtttgatataatcatcactatcaagtgagccatacaaatatattgtagcacattttttatataatttgagcctttcatgtgctactaaacttaatcaag 29129  T
Q  264 cacaaaaaagtttttaaatttacttcaggtgaa 296  Q
     |  |||||||| || |||| ||||||||||||    
T  29128 tatgaaaaagttcttgaattcacttcaggtgaa 29096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 164 - 296
Target Start/End: Complemental strand, 39217 - 39085
Alignment:
Q  164 agtttcatataatcatcaccatcaaataagtcatacaaatatgttctaacatatctttcatgtaaattaagtctttcatgtggtactaaatttaatccag 263  Q
    ||||| ||||||||||||| ||||| | |||||||||||||| || || || || ||| || ||| || || |||||||||| |||| || |||||| ||    
T  39217 agtttgatataatcatcactatcaagtgagtcatacaaatatattgtagcacattttttatataatttgagcctttcatgtgctactgaacttaatcaag 39118  T
Q  264 cacaaaaaagtttttaaatttacttcaggtgaa 296  Q
     |  |||||||| || |||| ||||||||||||    
T  39117 tatgaaaaagttcttgaattcacttcaggtgaa 39085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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