View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4171_low_6 (Length: 405)

Name: NF4171_low_6
Description: NF4171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4171_low_6
NF4171_low_6
[»] chr1 (1 HSPs)
chr1 (8-389)||(5130463-5130853)
[»] chr5 (14 HSPs)
chr5 (173-390)||(9074779-9074995)
chr5 (173-389)||(8677636-8677851)
chr5 (173-390)||(8535332-8535548)
chr5 (174-390)||(8528778-8528993)
chr5 (176-389)||(8636701-8636913)
chr5 (173-389)||(8644043-8644258)
chr5 (173-389)||(8548151-8548366)
chr5 (173-386)||(1600346-1600555)
chr5 (210-307)||(8641242-8641339)
chr5 (189-265)||(9003317-9003393)
chr5 (199-303)||(2845169-2845273)
chr5 (197-265)||(2905127-2905195)
chr5 (199-265)||(2857028-2857094)
chr5 (96-130)||(36551390-36551424)
[»] chr7 (3 HSPs)
chr7 (199-367)||(35779694-35779861)
chr7 (173-390)||(48361908-48362129)
chr7 (96-130)||(46355860-46355894)
[»] chr4 (2 HSPs)
chr4 (174-390)||(9442939-9443154)
chr4 (96-128)||(49370040-49370072)
[»] scaffold0627 (1 HSPs)
scaffold0627 (173-265)||(4491-4583)
[»] chr6 (2 HSPs)
chr6 (173-262)||(16716178-16716267)
chr6 (347-389)||(16716363-16716405)
[»] chr3 (2 HSPs)
chr3 (96-130)||(26990456-26990490)
chr3 (96-130)||(53519824-53519858)
[»] chr2 (4 HSPs)
chr2 (96-130)||(2610832-2610866)
chr2 (96-130)||(17429294-17429328)
chr2 (96-130)||(39709205-39709239)
chr2 (93-130)||(33504468-33504505)


Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 8 - 389
Target Start/End: Original strand, 5130463 - 5130853
Alignment:
Q  8 aagcataggcagtacggtaatgtaggaaactcacacatgtcttatgaatcaaactaattacgattgatttttaagggagcctcagattcaac-------- 99  Q
    ||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||            
T  5130463 aagcacaggcggtacagtaatgtaggaaactcacacatgtcttatgaatcaaactaattacgattgatttttaaggaagcctcagattcaacaacaacaa 5130562  T
Q  100 -aaccaagccatatctcactaagtggggtcggggagcatcagattcatttgggtaaataaaattttagaagccacttaccttgagtgtatattcagcacc 198  Q
     ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  5130563 caaccaagccatatctcattaagtggggtcggggagcatcagattcatttgggtaaataaaattttagaagccacttaccttgagtgaatattcagcacc 5130662  T
Q  199 tcaatattgtctcctttcacaatatccttcattgaaattagacttggaatatgtggaattacttcaatcttttctgaacgagtcccatgaattcgaaaaa 298  Q
    ||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  5130663 tcaatattgtctcctttcacaatatcctttagtgaaattagacttgaaatatgtggaattacttcaatcttttttgaacaagtcccatgaattcgaaaaa 5130762  T
Q  299 ctttgcatctatatttctccggttcatggtaagacaaaacagttgcaggaatgatatagcaatatggcagcaccctcttcaaagtgtttta 389  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5130763 ctttgtatctatatttctccggttcatggtaagacaaaacagttgcaggaatgatatagcaatatggcagcaccctcttcaaagtgtttta 5130853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 110; Significance: 3e-55; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 173 - 390
Target Start/End: Complemental strand, 9074995 - 9074779
Alignment:
Q  173 cttaccttgagtgtatattcagcacctcaatattgtctcctttcacaatatccttcattgaaattagacttggaatatgtggaattacttcaatcttttc 272  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||  | |||||||| |||||||||||||||||||||||| ||||||||||     |     
T  9074995 cttaccttgagtggatattcagcacctcgatattgtctcctttcaagacatccttcaatgaaattagacttggaatatgtgggattacttcaaaaaactt 9074896  T
Q  273 tgaacgagtcccatgaattcgaaaaactttgcatctatatttctccggttcatggtaagacaaaacagttgcaggaatgatatagcaatatggcagcacc 372  Q
    |||| || ||||||||||||||||||||||| ||| ||||||||| ||||||| | |||| |||||| ||| || ||||||||| |||||||||||||||    
T  9074895 tgaatgactcccatgaattcgaaaaactttgaatccatatttctcaggttcatag-aagataaaacaattgtagcaatgatataacaatatggcagcacc 9074797  T
Q  373 ctcttcaaagtgttttat 390  Q
     |||||||||||||||||    
T  9074796 ttcttcaaagtgttttat 9074779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 173 - 389
Target Start/End: Original strand, 8677636 - 8677851
Alignment:
Q  173 cttaccttgagtgtatattcagcacctcaatattgtctcctttcacaatatccttcattgaaattagacttggaatatgtggaattacttcaatcttttc 272  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||| ||||||||||| |||||    |||    
T  8677636 cttaccttgagtggatattcagcacctcaatattgtctcctttcacaacatccttcaatgagattagacttggaacatgtggaattatttcaacaaattc 8677735  T
Q  273 tgaacgagtcccatgaattcgaaaaactttgcatctatatttctccggttcatggtaagacaaaacagttgcaggaatgatatagcaatatggcagcacc 372  Q
     |||  ||| || |||||||||||||||||| | | || |||||| ||||||| || ||| || ||| |||||||||||||||| |||||||||||||||    
T  8677736 ggaagaagtgccgtgaattcgaaaaactttgaaaccatgtttctcgggttcatagt-agataagacaattgcaggaatgatataacaatatggcagcacc 8677834  T
Q  373 ctcttcaaagtgtttta 389  Q
    |||||||||||||||||    
T  8677835 ctcttcaaagtgtttta 8677851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 173 - 390
Target Start/End: Original strand, 8535332 - 8535548
Alignment:
Q  173 cttaccttgagtgtatattcagcacctcaatattgtctcctttcacaatatccttcattgaaattagacttggaatatgtggaattacttcaatcttttc 272  Q
    ||||||||||||| |||||||| |||||||||||||| ||||||| || |||||||| |||||||||||||||||| ||||| ||||||||||     |     
T  8535332 cttaccttgagtggatattcagaacctcaatattgtcacctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaaaaatt 8535431  T
Q  273 tgaacgagtcccatgaattcgaaaaactttgcatctatatttctccggttcatggtaagacaaaacagttgcaggaatgatatagcaatatggcagcacc 372  Q
    ||||| | |||| | |||||||||||||| | ||| ||||||||| ||||||| || ||| |||||| |||||||||||||||| |||||||||||||||    
T  8535432 tgaactactcccgtaaattcgaaaaacttcgaatccatatttctcaggttcatagt-agataaaacaattgcaggaatgatataacaatatggcagcacc 8535530  T
Q  373 ctcttcaaagtgttttat 390  Q
     |||||||||||||||||    
T  8535531 ttcttcaaagtgttttat 8535548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 174 - 390
Target Start/End: Original strand, 8528778 - 8528993
Alignment:
Q  174 ttaccttgagtgtatattcagcacctcaatattgtctcctttcacaatatccttcattgaaattagacttggaatatgtggaattacttcaatcttttct 273  Q
    |||||||||||| |||||||| |||||||||||| ||||||||| || |||||||| |||||||||||||||||| ||||| ||||||||||  |  | |    
T  8528778 ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataattt 8528877  T
Q  274 gaacgagtcccatgaattcgaaaaactttgcatctatatttctccggttcatggtaagacaaaacagttgcaggaatgatatagcaatatggcagcaccc 373  Q
       ||| ||||||||||||||||||||||| | | |||||| || ||||| | || ||  |||||| ||| |||||||||||  |||||||||||||||     
T  8528878 atccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagt-aggtaaaacaattggaggaatgatatgacaatatggcagcacct 8528976  T
Q  374 tcttcaaagtgttttat 390  Q
    |||||||||||||||||    
T  8528977 tcttcaaagtgttttat 8528993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 176 - 389
Target Start/End: Original strand, 8636701 - 8636913
Alignment:
Q  176 accttgagtgtatattcagcacctcaatattgtctcctttcacaatatccttcattgaaattagacttggaatatgtggaattacttcaatcttttctga 275  Q
    |||||||||| |||||||||||||| ||||||||||||||||| | |||||||| ||| ||||||||||||| ||||||||||| |||||     || ||    
T  8636701 accttgagtggatattcagcacctcgatattgtctcctttcacgacatccttcaatgagattagacttggaacatgtggaattatttcaacaaactcgga 8636800  T
Q  276 acgagtcccatgaattcgaaaaactttgcatctatatttctccggttcatggtaagacaaaacagttgcaggaatgatatagcaatatggcagcaccctc 375  Q
    |  ||| || ||||||| |||||||||| | | |  |||||| ||||||| || ||| || ||| |||||||||||||||| |||||||||||| |||||    
T  8636801 agaagtgccttgaattctaaaaactttgaaaccaagtttctcgggttcatagt-agataagacaattgcaggaatgatataacaatatggcagccccctc 8636899  T
Q  376 ttcaaagtgtttta 389  Q
    ||||||||||||||    
T  8636900 ttcaaagtgtttta 8636913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 173 - 389
Target Start/End: Original strand, 8644043 - 8644258
Alignment:
Q  173 cttaccttgagtgtatattcagcacctcaatattgtctcctttcacaatatccttcattgaaattagacttggaatatgtggaattacttcaatcttttc 272  Q
    ||||||||||||| |||||||||| |||| |||||||||||||||||| |||||||| ||| ||||||||||||| ||||||||||| |||||    |||    
T  8644043 cttaccttgagtggatattcagcatctcagtattgtctcctttcacaacatccttcaatgagattagacttggaacatgtggaattatttcaacaaattc 8644142  T
Q  273 tgaacgagtcccatgaattcgaaaaactttgcatctatatttctccggttcatggtaagacaaaacagttgcaggaatgatatagcaatatggcagcacc 372  Q
     |||  | | || |||||||||||||||||| |   || |||||  ||||||| || ||| || ||| |||||||||||||||| |||||||||||| ||    
T  8644143 ggaagaaatgccgtgaattcgaaaaactttgaaagcatgtttcttgggttcatagt-agataagacaattgcaggaatgatataacaatatggcagcccc 8644241  T
Q  373 ctcttcaaagtgtttta 389  Q
    ||||||||||| |||||    
T  8644242 ctcttcaaagtttttta 8644258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 173 - 389
Target Start/End: Complemental strand, 8548366 - 8548151
Alignment:
Q  173 cttaccttgagtgtatattcagcacctcaatattgtctcctttcacaatatccttcattgaaattagacttggaatatgtggaattacttcaatcttttc 272  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||  | |||||||| ||| |||||||||||||||||| ||||||||||||    ||     
T  8548366 cttactttgagtggatattcagcacctcaatattgtctcctttcatgacatccttcaatgagattagacttggaatatgttgaattacttcaaatgattg 8548267  T
Q  273 tgaacgagtcccatgaattcgaaaaactttgcatctatatttctccggttcatggtaagacaaaacagttgcaggaatgatatagcaatatggcagcacc 372  Q
    ||||  ||  ||||||||||||||| |||||  || |||||| || || | || |||||  |||||| |   | |||||||||| ||||| |||||||||    
T  8548266 tgaagaagagccatgaattcgaaaatctttgactccatatttatcggggttatagtaag-taaaacaatccaatgaatgatataacaatacggcagcacc 8548168  T
Q  373 ctcttcaaagtgtttta 389  Q
    |||||||||||||||||    
T  8548167 ctcttcaaagtgtttta 8548151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 173 - 386
Target Start/End: Complemental strand, 1600555 - 1600346
Alignment:
Q  173 cttaccttgagtgtatattcagcacctcaatattgtctcctttcacaatatccttcattgaaattagacttggaatatgtggaattacttcaatcttttc 272  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||  | |||||||| ||||||||||||||||||||| || |||| |||||     ||    
T  1600555 cttaccttgagtggatattcagcacctcaatattgtcccctttcaagacatccttcaatgaaattagacttggaatatgcgggattatttcaaaacaatc 1600456  T
Q  273 tgaacgagtcccatgaattcgaaaaactttgcatctatatttctccggttcatggtaagacaaaacagttgcaggaatgatatagcaatatggcagcacc 372  Q
    ||||||| |||||||||||  |||| ||||||||| ||||||| | |||||||  | |||  ||||| ||   | ||| ||||| |||||||||||||||    
T  1600455 tgaacgactcccatgaatttcaaaagctttgcatcgatatttcgcaggttcataat-agattaaacaatt---gtaatcatataacaatatggcagcacc 1600360  T
Q  373 ctcttcaaagtgtt 386  Q
     |||||||||||||    
T  1600359 ttcttcaaagtgtt 1600346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 210 - 307
Target Start/End: Original strand, 8641242 - 8641339
Alignment:
Q  210 tcctttcacaatatccttcattgaaattagacttggaatatgtggaattacttcaatcttttctgaacgagtcccatgaattcgaaaaactttgcatc 307  Q
    ||||||||| | |||||||| ||| |||||||||||||||||||||||||||||||   ||||||||| |||||||||||||   |||||||||||||    
T  8641242 tcctttcacgacatccttcaatgagattagacttggaatatgtggaattacttcaactctttctgaacaagtcccatgaattttgaaaactttgcatc 8641339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 189 - 265
Target Start/End: Original strand, 9003317 - 9003393
Alignment:
Q  189 attcagcacctcaatattgtctcctttcacaatatccttcattgaaattagacttggaatatgtggaattacttcaa 265  Q
    ||||| |||||||| ||||||||| || |||   ||||||| ||| |||||||||||||||||||||||||||||||    
T  9003317 attcaacacctcaacattgtctccatttacagcctccttcaatgagattagacttggaatatgtggaattacttcaa 9003393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 303
Target Start/End: Complemental strand, 2845273 - 2845169
Alignment:
Q  199 tcaatattgtctcctttcacaatatccttcattgaaattagacttggaatatgtggaattacttcaatcttttctgaacgagtcccatgaattcgaaaaa 298  Q
    |||| ||||||||||||||| | ||| |||| ||| |||||||||||||||| |  |||||||||||  | | || ||   ||||| |||||||||||||    
T  2845273 tcaacattgtctcctttcacgacatcgttcaatgatattagacttggaatatattcaattacttcaacttctcctaaagttgtcccttgaattcgaaaaa 2845174  T
Q  299 ctttg 303  Q
    |||||    
T  2845173 ctttg 2845169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 265
Target Start/End: Complemental strand, 2905195 - 2905127
Alignment:
Q  197 cctcaatattgtctcctttcacaatatccttcattgaaattagacttggaatatgtggaattacttcaa 265  Q
    |||||| ||||||||| ||||| | ||| |||| ||| |||||||||||||||||| |||| |||||||    
T  2905195 cctcaacattgtctccattcacgacatctttcaatgatattagacttggaatatgttgaataacttcaa 2905127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 199 - 265
Target Start/End: Complemental strand, 2857094 - 2857028
Alignment:
Q  199 tcaatattgtctcctttcacaatatccttcattgaaattagacttggaatatgtggaattacttcaa 265  Q
    |||| ||||||||||||||| | ||| |||| ||| |||||||||||||||| |  |||||||||||    
T  2857094 tcaacattgtctcctttcacgacatcgttcaatgatattagacttggaatatattcaattacttcaa 2857028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 130
Target Start/End: Complemental strand, 36551424 - 36551390
Alignment:
Q  96 caacaaccaagccatatctcactaagtggggtcgg 130  Q
    ||||||||||||| |||||||||||||||||||||    
T  36551424 caacaaccaagccttatctcactaagtggggtcgg 36551390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 199 - 367
Target Start/End: Original strand, 35779694 - 35779861
Alignment:
Q  199 tcaatattgtctcctttcacaatatccttcattgaaattagacttggaatatgtggaattacttcaatcttttctgaacgagtcccatgaattcgaaaaa 298  Q
    ||||||||||||||||| |||| |||||||| ||| |||||||||||||||||||||||||||||||    || ||||||||||||| ||||||||||||    
T  35779694 tcaatattgtctccttttacaacatccttcaatgatattagacttggaatatgtggaattacttcaacagattttgaacgagtcccacgaattcgaaaaa 35779793  T
Q  299 ctttgcatctatatttctccggttcatggtaagacaaaacagttgcaggaatgatatagcaatatggca 367  Q
    ||||| ||| ||||||||| ||||||  || ||| |||||| ||||| |||||||||| ||||||||||    
T  35779794 ctttgtatccatatttctcaggttcaaagt-agataaaacaattgcatgaatgatataacaatatggca 35779861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 173 - 390
Target Start/End: Complemental strand, 48362129 - 48361908
Alignment:
Q  173 cttaccttgagtgtatattcagcacctcaatattgtctcctttcacaatatccttcattgaaatta-----gacttggaatatgtggaattacttcaatc 267  Q
    ||||||||||||| | ||||| |||||| ||||| ||||||||||  | |||||||| ||||||||     |||||||||||||||| ||||||||||      
T  48362129 cttaccttgagtggacattcaacacctccatattatctcctttcaagacatccttcaatgaaattaaattagacttggaatatgtgggattacttcaaaa 48362030  T
Q  268 ttttctgaacgagtcccatgaattcgaaaaactttgcatctatatttctccggttcatggtaagacaaaacagttgcaggaatgatatagcaatatggca 367  Q
        |||||||| |||| |||||  ||||| ||||||||||||||||||| |||||||  || ||  |||| || | |||||||||||| ||||||||||    
T  48362029 gaacctgaacgactcccgtgaatatgaaaagctttgcatctatatttctcaggttcataata-gattaaacggtcgtaggaatgatataacaatatggca 48361931  T
Q  368 gcaccctcttcaaagtgttttat 390  Q
    ||||| |||||||||||||||||    
T  48361930 gcaccttcttcaaagtgttttat 48361908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 130
Target Start/End: Original strand, 46355860 - 46355894
Alignment:
Q  96 caacaaccaagccatatctcactaagtggggtcgg 130  Q
    ||||||||||||| |||||||||||||||||||||    
T  46355860 caacaaccaagccttatctcactaagtggggtcgg 46355894  T

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Target: chr4 (Bit Score: 81; Significance: 5e-38; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 174 - 390
Target Start/End: Original strand, 9442939 - 9443154
Alignment:
Q  174 ttaccttgagtgtatattcagcacctcaatattgtctcctttcacaatatccttcattgaaattagacttggaatatgtggaattacttcaatcttttct 273  Q
    |||||||||||| |||||||| |||||||||||| ||||||||| || |||||||| |||||||||||||||||| ||| | ||||||||||  |  | |    
T  9442939 ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgttggattacttcaaaataattt 9443038  T
Q  274 gaacgagtcccatgaattcgaaaaactttgcatctatatttctccggttcatggtaagacaaaacagttgcaggaatgatatagcaatatggcagcaccc 373  Q
       ||| ||||||||||||||||||||||| | | |||||| || ||||| | || ||  |||||| ||| |||||||||||  |||||||||||||||     
T  9443039 ttccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagt-aggtaaaacaattgaaggaatgatatgacaatatggcagcacct 9443137  T
Q  374 tcttcaaagtgttttat 390  Q
    |||||||||||||||||    
T  9443138 tcttcaaagtgttttat 9443154  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 128
Target Start/End: Complemental strand, 49370072 - 49370040
Alignment:
Q  96 caacaaccaagccatatctcactaagtggggtc 128  Q
    |||||||||||||||||| ||||||||||||||    
T  49370072 caacaaccaagccatatcccactaagtggggtc 49370040  T

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Target: scaffold0627 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 173 - 265
Target Start/End: Original strand, 4491 - 4583
Alignment:
Q  173 cttaccttgagtgtatattcagcacctcaatattgtctcctttcacaatatccttcattgaaattagacttggaatatgtggaattacttcaa 265  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||   |||||||| ||| |||||||||||||||||||||||||||||||    
T  4491 cttaccttgagtggatattcaacacctcaatattgtctcctttcacggcatccttcaatgagattagacttggaatatgtggaattacttcaa 4583  T

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Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 173 - 262
Target Start/End: Original strand, 16716178 - 16716267
Alignment:
Q  173 cttaccttgagtgtatattcagcacctcaatattgtctcctttcacaatatccttcattgaaattagacttggaatatgtggaattactt 262  Q
    ||||||||||||| ||||||| |||||||||||| |||||||||||   |||||||| ||| ||||||||||||||||||||||||||||    
T  16716178 cttaccttgagtggatattcaacacctcaatattctctcctttcacggcatccttcaatgagattagacttggaatatgtggaattactt 16716267  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 389
Target Start/End: Original strand, 16716363 - 16716405
Alignment:
Q  347 gaatgatatagcaatatggcagcaccctcttcaaagtgtttta 389  Q
    |||||||||| ||||| | ||||||||||||||||||||||||    
T  16716363 gaatgatataacaatacgccagcaccctcttcaaagtgtttta 16716405  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 130
Target Start/End: Complemental strand, 26990490 - 26990456
Alignment:
Q  96 caacaaccaagccatatctcactaagtggggtcgg 130  Q
    ||||||||||||| |||||||||||||||||||||    
T  26990490 caacaaccaagccttatctcactaagtggggtcgg 26990456  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 130
Target Start/End: Complemental strand, 53519858 - 53519824
Alignment:
Q  96 caacaaccaagccatatctcactaagtggggtcgg 130  Q
    ||||||||||||| |||||||||||||||||||||    
T  53519858 caacaaccaagccttatctcactaagtggggtcgg 53519824  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 130
Target Start/End: Complemental strand, 2610866 - 2610832
Alignment:
Q  96 caacaaccaagccatatctcactaagtggggtcgg 130  Q
    ||||||||||||| |||||||||||||||||||||    
T  2610866 caacaaccaagccttatctcactaagtggggtcgg 2610832  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 130
Target Start/End: Complemental strand, 17429328 - 17429294
Alignment:
Q  96 caacaaccaagccatatctcactaagtggggtcgg 130  Q
    ||||||||||||| |||||||||||||||||||||    
T  17429328 caacaaccaagccttatctcactaagtggggtcgg 17429294  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 130
Target Start/End: Original strand, 39709205 - 39709239
Alignment:
Q  96 caacaaccaagccatatctcactaagtggggtcgg 130  Q
    |||||||||||||||||| ||||||||||||||||    
T  39709205 caacaaccaagccatatcccactaagtggggtcgg 39709239  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 130
Target Start/End: Complemental strand, 33504505 - 33504468
Alignment:
Q  93 attcaacaaccaagccatatctcactaagtggggtcgg 130  Q
    |||||||||||||||| |||| ||||||||||||||||    
T  33504505 attcaacaaccaagccttatcccactaagtggggtcgg 33504468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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