View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4171_low_7 (Length: 386)

Name: NF4171_low_7
Description: NF4171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4171_low_7
NF4171_low_7
[»] chr2 (12 HSPs)
chr2 (156-386)||(42268687-42268917)
chr2 (1-244)||(42280337-42280580)
chr2 (1-246)||(42259787-42260032)
chr2 (1-155)||(42268332-42268486)
chr2 (1-246)||(42254194-42254431)
chr2 (91-218)||(42313542-42313669)
chr2 (267-352)||(42280580-42280665)
chr2 (65-192)||(42308304-42308431)
chr2 (127-226)||(42285478-42285581)
chr2 (136-226)||(42272453-42272547)
chr2 (154-218)||(42308879-42308943)
chr2 (154-187)||(42309635-42309668)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-246)||(488622-488867)


Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 156 - 386
Target Start/End: Original strand, 42268687 - 42268917
Alignment:
Q  156 aagcttgaagtgacagaatcacatgtaagtagtaagggcttgtttattaatcttgatagcaagttgtgcaaatgttttatacaatattttttgtattgag 255  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42268687 aagcttgaagtgacagaatcgcatgtaagtagtaagggcttgtttattaatcttgatagcaagttgtgcaaatgttttatacaatattttttgtattgag 42268786  T
Q  256 taaactcttactagttgtgtctatggatacttctttaggtttacataaaccctaaagtttttactatttcctttattgttgagatgtcttttttcttcag 355  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  42268787 taaactcttactagttgtgtctatggatacttctttaggtttacataaaccctaaagtttttactatttcctttattgttgagatgtcttttttcttaag 42268886  T
Q  356 ataaatcatagtatcagtgcttttccaatat 386  Q
    | |||  ||||| ||||||||||||||||||    
T  42268887 aaaaaaaatagtctcagtgcttttccaatat 42268917  T

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Target: chr2; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 42280337 - 42280580
Alignment:
Q  1 cataggtttgattacattatttcccatttccaccttatgttttcattttcaccttttgcataaaataatgatggctatttgcataatgtgttctttgcag 100  Q
    |||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  42280337 cataggtttgattaaattatttcccatttccatcttatgttttcgttttcaccttttgcataaaataatgatggatatttgcataatgtgttctttgcag 42280436  T
Q  101 agaagctttctcaaatagttggcaagatttaatgctggcagagaaacaattctcaaagcttgaagtgacagaatcacatgtaagtagtaagggcttgttt 200  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |    
T  42280437 agaagctttctcaaatagtttgcaagatttaatgctggcagagaaacaatcctcaaagcttgaagtgacagaatcacatgtaagtagtaagggcttgtat 42280536  T
Q  201 attaatcttgatagcaagttgtgcaaatgttttatacaatattt 244  Q
    ||| ||||||||| ||||||||||| ||||||||||||||||||    
T  42280537 attgatcttgataacaagttgtgcagatgttttatacaatattt 42280580  T

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Target: chr2; HSP #3
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 42259787 - 42260032
Alignment:
Q  1 cataggtttgattacattatttcccatttccaccttatgttttcattttcaccttttgcataaaataatgatggctatttgcataatgtgttctttgcag 100  Q
    ||||| |||||||| |||||||| ||||||||  ||| |||||| |||||||||||| |||||||||||||||| |||||||||||| ||||||||||||    
T  42259787 catagttttgattaaattatttctcatttccatattacgttttcgttttcaccttttccataaaataatgatggatatttgcataatatgttctttgcag 42259886  T
Q  101 agaagctttctcaaatagttggcaagatttaatgctggcagagaaacaattctcaaagcttgaagtgacagaatcacatgtaagtagtaagggcttgttt 200  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |    
T  42259887 agaagctttctcaaatagtttgcaagatttaaagctggcagagaaacaagtctcaaagcttgaagtgacagaatcacatgtaagtagtaagggcttgtat 42259986  T
Q  201 attaatcttgatagcaagttgtgcaaatgttttatacaatattttt 246  Q
    ||| ||||||||| ||||||||||| ||||||||||||||||||||    
T  42259987 attgatcttgataacaagttgtgcagatgttttatacaatattttt 42260032  T

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Target: chr2; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 42268332 - 42268486
Alignment:
Q  1 cataggtttgattacattatttcccatttccaccttatgttttcattttcaccttttgcataaaataatgatggctatttgcataatgtgttctttgcag 100  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  42268332 cataggtttgattaaattatttcccatttccaacttatgttttcattttcaccttgtgcataaaataatgatggctatttgcataatgtgttctttgcag 42268431  T
Q  101 agaagctttctcaaatagttggcaagatttaatgctggcagagaaacaattctca 155  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  42268432 agaagctttctcaaatagtttgcaagatttaatgctggcagagaaacaattctca 42268486  T

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Target: chr2; HSP #5
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 42254194 - 42254431
Alignment:
Q  1 cataggtttgattacattatttcccatttccaccttatgttttcattttcaccttttgcataaaataatgatggctatttgcataatgtgttctttgcag 100  Q
    |||| ||||||||| |||||||| |||||||| |||| |||||| ||| |||||||| |||||||||||||| | |||||||||||  | | ||||||||    
T  42254194 cataagtttgattaaattatttctcatttccatcttacgttttcgttt-caccttttccataaaataatgattgatatttgcataaaatat-ctttgcag 42254291  T
Q  101 agaagctttctcaaatagttggcaagatttaatgctggcagagaaacaattctcaaagcttgaagtgacagaatcacatgtaagtagtaagggcttgttt 200  Q
    |||||||||||||||||||| |||||||||||   ||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||      
T  42254292 agaagctttctcaaatagtttgcaagatttaaacgtggcagagaaacaattctcaaaggttaaagtgagagaatcacatgtaagtagtaagggcttgt-- 42254389  T
Q  201 attaatcttgatagcaagttgtgcaaatgttttatacaatattttt 246  Q
        || |||||| ||||||||||| || ||||||||||| |||||    
T  42254390 ----atattgataacaagttgtgcagatattttatacaatgttttt 42254431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 91 - 218
Target Start/End: Original strand, 42313542 - 42313669
Alignment:
Q  91 ttctttgcagagaagctttctcaaatagttggcaagatttaatgctggcagagaaacaattctcaaagcttgaagtgacagaatcacatgtaagtagtaa 190  Q
    ||||||| |||||| | ||||||||||||| |||||||| || ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  42313542 ttctttgtagagaaacattctcaaatagtttgcaagattcaaagctggcagagaaacaattcccaaagcatgaagtgacagaatcacatgtaagtagtaa 42313641  T
Q  191 gggcttgtttattaatcttgatagcaag 218  Q
    |||||||| |||| ||||||||| ||||    
T  42313642 gggcttgtatattgatcttgataacaag 42313669  T

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Target: chr2; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 267 - 352
Target Start/End: Original strand, 42280580 - 42280665
Alignment:
Q  267 tagttgtgtctatggatacttctttaggtttacataaaccctaaagtttttactatttcctttattgttgagatgtcttttttctt 352  Q
    ||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  42280580 tagttatgtctatggatacttcttaaggtttacataaaccctagagtttttactatttcctttattgttgagatggcttttttctt 42280665  T

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Target: chr2; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 65 - 192
Target Start/End: Original strand, 42308304 - 42308431
Alignment:
Q  65 ataatgatggctatttgcataatgtgttctttgcagagaagctttctcaaatagttggcaagatttaatgctggcagagaaacaattctcaaagcttgaa 164  Q
    ||||||||||||||||||||| | ||||||||| |||||| | ||||||||||||| |||||||| || |||||| |||||||||||| | |||||||||    
T  42308304 ataatgatggctatttgcatattatgttctttgtagagaaacattctcaaatagtttgcaagattcaaagctggctgagaaacaattcccgaagcttgaa 42308403  T
Q  165 gtgacagaatcacatgtaagtagtaagg 192  Q
    || | |||||||||| ||||||| ||||    
T  42308404 gttaaagaatcacatataagtagcaagg 42308431  T

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Target: chr2; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 127 - 226
Target Start/End: Original strand, 42285478 - 42285581
Alignment:
Q  127 atttaatgctggcagagaaacaattctcaaagcttgaagtgacagaatcacatg----taagtagtaagggcttgtttattaatcttgatagcaagttgt 222  Q
    |||||||| ||||||||||||||||||||||||||||||||||| |||| || |    ||||||||| |||||||| |||| ||||||||| ||||| ||    
T  42285478 atttaatgttggcagagaaacaattctcaaagcttgaagtgacaaaatcgcacgtaattaagtagtacgggcttgtatattgatcttgataacaagtcgt 42285577  T
Q  223 gcaa 226  Q
    ||||    
T  42285578 gcaa 42285581  T

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Target: chr2; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 136 - 226
Target Start/End: Original strand, 42272453 - 42272547
Alignment:
Q  136 tggcagagaaacaattctcaaagcttgaagtgacagaatcacatg----taagtagtaagggcttgtttattaatcttgatagcaagttgtgcaa 226  Q
    ||||||||||||||||||||||||||||||||||| |||  ||||    ||||||||| |||||||| |||| ||||||||| ||||| ||||||    
T  42272453 tggcagagaaacaattctcaaagcttgaagtgacaaaatggcatgtaattaagtagtacgggcttgtatattgatcttgataacaagtcgtgcaa 42272547  T

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Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 218
Target Start/End: Original strand, 42308879 - 42308943
Alignment:
Q  154 caaagcttgaagtgacagaatcacatgtaagtagtaagggcttgtttattaatcttgatagcaag 218  Q
    |||| |||||||| ||||||||||||||||||||| ||||| ||| | || ||||||||| ||||    
T  42308879 caaatcttgaagttacagaatcacatgtaagtagtgagggcatgtctgttgatcttgataacaag 42308943  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 187
Target Start/End: Original strand, 42309635 - 42309668
Alignment:
Q  154 caaagcttgaagtgacagaatcacatgtaagtag 187  Q
    ||||||||||||| ||||||||||||||||||||    
T  42309635 caaagcttgaagttacagaatcacatgtaagtag 42309668  T

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Target: scaffold0002 (Bit Score: 178; Significance: 6e-96; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 488622 - 488867
Alignment:
Q  1 cataggtttgattacattatttcccatttccaccttatgttttcattttcaccttttgcataaaataatgatggctatttgcataatgtgttctttgcag 100  Q
    ||||| |||||||| |||||||| ||||||||  ||| |||||| |||||||||||| |||||||||||||||| |||||||||||| ||||||||||||    
T  488622 catagttttgattaaattatttctcatttccatattacgttttcgttttcaccttttccataaaataatgatggatatttgcataatatgttctttgcag 488721  T
Q  101 agaagctttctcaaatagttggcaagatttaatgctggcagagaaacaattctcaaagcttgaagtgacagaatcacatgtaagtagtaagggcttgttt 200  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |    
T  488722 agaagctttctcaaatagtttgcaagatttaaagctggcagagaaacaagtctcaaagcttgaagtgacagaatcacatgtaagtagtaagggcttgtat 488821  T
Q  201 attaatcttgatagcaagttgtgcaaatgttttatacaatattttt 246  Q
    ||| ||||||||| ||||||||||| ||||||||||||||||||||    
T  488822 attgatcttgataacaagttgtgcagatgttttatacaatattttt 488867  T

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