View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4171_low_8 (Length: 375)

Name: NF4171_low_8
Description: NF4171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4171_low_8
NF4171_low_8
[»] chr2 (4 HSPs)
chr2 (52-360)||(20485867-20486176)
chr2 (52-360)||(28015002-28015324)
chr2 (240-360)||(20481233-20481354)
chr2 (240-360)||(28019825-28019949)
[»] chr6 (4 HSPs)
chr6 (52-360)||(6339973-6340295)
chr6 (240-360)||(32621960-32622081)
chr6 (240-360)||(6344796-6344920)
chr6 (154-188)||(13140150-13140184)
[»] chr5 (2 HSPs)
chr5 (52-229)||(16993038-16993215)
chr5 (240-360)||(16988397-16988518)
[»] chr4 (3 HSPs)
chr4 (154-249)||(14033990-14034086)
chr4 (154-250)||(17127432-17127529)
chr4 (154-226)||(19806659-19806732)
[»] chr8 (1 HSPs)
chr8 (210-244)||(15755122-15755156)


Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 52 - 360
Target Start/End: Original strand, 20485867 - 20486176
Alignment:
Q  52 tgtgattgaagaaatcaagggtaactcaatacagaattgagtacgaaacaaggatatatgaagaagaatcacgaagattcaagaaaaaatcaaggaaaat 151  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  20485867 tgtgattgaagaaatcaagggtaactcaatacagaattgagtacgaaacaaggataaatgaagaagaatcacgaagattcaagaaaaaatcaaggaaaat 20485966  T
Q  152 ttgaagcttgaagaacaagcatcaatggcggaagctagatctagatggtaactaactctctcaagaagagagagaaaaactgataccatattaagaatca 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20485967 ttgaagcttgaagaacaagcatcaatggcggaagctagatctagatcgtaactaactctctcaagaagagagagaaaaactgataccatattaagaatca 20486066  T
Q  252 aagaaagatagaaactgattcattaaaat-tgaaaagagtgtacatcaggttatttatacaagggaattgtactgtctaatatgagaatgtactactata 350  Q
    |||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  20486067 aagaaagatagaaactgattcattgaattatgaaaagagtgtacatcaggttatttatacaaaggaattgtactgtctaatatgagaatgtactactata 20486166  T
Q  351 cttaagctat 360  Q
    ||||||||||    
T  20486167 cttaagctat 20486176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 52 - 360
Target Start/End: Complemental strand, 28015324 - 28015002
Alignment:
Q  52 tgtgattgaagaaatcaagggtaactcaatacagaattgagtacgaaacaaggatatatgaagaagaatcacgaagattcaagaaaaaatcaaggaaaa- 150  Q
    ||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||| ||||     
T  28015324 tgtgattgaagaaatcaagagtaactcaatacagaattgagtattaaacaaggatatatgaagaagaatcacgaagattcaaggaaaaatcaagtaaaaa 28015225  T
Q  151 -------tt--tgaagcttgaagaacaagcatcaatggcggaagctagatctagatggtaactaactctctcaagaagagagagaaaaactgataccata 241  Q
           ||  ||||||| |||||  || |||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||    
T  28015224 aagaagtttgatgaagctagaagaggaatcatcaatggcggaagctagatctagatcataactaactctctcaagaagagagag-aaaactgataccata 28015126  T
Q  242 ttaagaatcaaagaaagat-agaaactgattcatt-aaaattgaaaagag---tgtacatcaggttatttatacaagggaattgtactgtctaatatgag 336  Q
    ||||||||||||||||||| | ||||||||||||| || |||||||||||   ||||||||  |||||||||||||  |||||||||| ||| ||||| |    
T  28015125 ttaagaatcaaagaaagataaaaaactgattcattgaagattgaaaagagtactgtacatccagttatttatacaaatgaattgtactatcttatatgtg 28015026  T
Q  337 aatgtactactatacttaagctat 360  Q
    ||||||||||||||||||||||||    
T  28015025 aatgtactactatacttaagctat 28015002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 240 - 360
Target Start/End: Original strand, 20481233 - 20481354
Alignment:
Q  240 tattaagaatcaaagaaagatagaaactgattcattaaaat-tgaaaagagtgtacatcaggttatttatacaagggaattgtactgtctaatatgagaa 338  Q
    |||||||||||||||||| ||||||||||||||||| || | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  20481233 tattaagaatcaaagaaatatagaaactgattcattgaattatgaaaagagtgtacatcaggttatttatacaaaggaattgtactgtctaatatgagaa 20481332  T
Q  339 tgtactactatacttaagctat 360  Q
    ||||||||||||||||||||||    
T  20481333 tgtactactatacttaagctat 20481354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 240 - 360
Target Start/End: Complemental strand, 28019949 - 28019825
Alignment:
Q  240 tattaagaatcaaagaaagatagaaactgattcattaaa-attgaaaagagt---gtacatcaggttatttatacaagggaattgtactgtctaatatga 335  Q
    |||||||||||||||||||||| || |||||||||| || ||||||||||||   |||||||  |||||||||||||  |||||||||| ||| |||||     
T  28019949 tattaagaatcaaagaaagataaaatctgattcattgaagattgaaaagagtactgtacatccagttatttatacaaatgaattgtactatcttatatgt 28019850  T
Q  336 gaatgtactactatacttaagctat 360  Q
    |||||||||||||||||||||||||    
T  28019849 gaatgtactactatacttaagctat 28019825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 170; Significance: 4e-91; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 52 - 360
Target Start/End: Complemental strand, 6340295 - 6339973
Alignment:
Q  52 tgtgattgaagaaatcaagggtaactcaatacagaattgagtacgaaacaaggatatatgaagaagaatcacgaagattcaagaaaaaatcaaggaaaa- 150  Q
    ||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||| ||||     
T  6340295 tgtgattgaagaaatcaagagtaactcaatacagaattgagtattaaacaaggatatatgaagaagaatcacgaagattcaaggaaaaatcaagtaaaaa 6340196  T
Q  151 -------tt--tgaagcttgaagaacaagcatcaatggcggaagctagatctagatggtaactaactctctcaagaagagagagaaaaactgataccata 241  Q
           ||  ||||||| |||||  || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  6340195 aagaagtttgatgaagctagaagaggaatcatcaatggcggaagctagatctagatcgtaactaactctctcaagaagagagag-aaaactgataccata 6340097  T
Q  242 ttaagaatcaaagaaagat-agaaactgattcatt-aaaattgaaaagag---tgtacatcaggttatttatacaagggaattgtactgtctaatatgag 336  Q
    ||||||||||||||||||| | ||||||||||||| || |||||||||||   ||||||||  |||||||||||||  |||||||||| ||| ||||| |    
T  6340096 ttaagaatcaaagaaagataaaaaactgattcattgaagattgaaaagagtactgtacatccagttatttatacaaatgaattgtactatcttatatgtg 6339997  T
Q  337 aatgtactactatacttaagctat 360  Q
    ||||||||||||||||||||||||    
T  6339996 aatgtactactatacttaagctat 6339973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 240 - 360
Target Start/End: Original strand, 32621960 - 32622081
Alignment:
Q  240 tattaagaatcaaagaaagatagaaactgattcattaaaattgaaaagagtgtacatcaggttatttatacaagggaattgtactgtctaat-atgagaa 338  Q
    |||||||||||||||||||||||||||||||||||| || || ||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||    
T  32621960 tattaagaatcaaagaaagatagaaactgattcattgaattttaaaagagtgtacatctggttatttatacaagggaattgtactatctaataatgagaa 32622059  T
Q  339 tgtactactatacttaagctat 360  Q
     ||||| |||||||||||||||    
T  32622060 agtactgctatacttaagctat 32622081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 240 - 360
Target Start/End: Complemental strand, 6344920 - 6344796
Alignment:
Q  240 tattaagaatcaaagaaagatagaaactgattcattaaa-attgaaaagagt---gtacatcaggttatttatacaagggaattgtactgtctaatatga 335  Q
    |||||||||||||||||||||| ||||||||||||| || ||| ||||||||   |||||||  |||||||||||||  |||||||||| ||| |||||     
T  6344920 tattaagaatcaaagaaagataaaaactgattcattgaagattaaaaagagtactgtacatccagttatttatacaaatgaattgtactatcttatatgt 6344821  T
Q  336 gaatgtactactatacttaagctat 360  Q
    |||||||||||||||||||||||||    
T  6344820 gaatgtactactatacttaagctat 6344796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 188
Target Start/End: Original strand, 13140150 - 13140184
Alignment:
Q  154 gaagcttgaagaacaagcatcaatggcggaagcta 188  Q
    ||||||||||||||||||||||||||| |||||||    
T  13140150 gaagcttgaagaacaagcatcaatggcagaagcta 13140184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 158; Significance: 5e-84; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 52 - 229
Target Start/End: Original strand, 16993038 - 16993215
Alignment:
Q  52 tgtgattgaagaaatcaagggtaactcaatacagaattgagtacgaaacaaggatatatgaagaagaatcacgaagattcaagaaaaaatcaaggaaaat 151  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||     
T  16993038 tgtgattgaagaaatcaagggtaactcaatacagaattgagtacgaaacaaggataaaagaagaagaatcacgaagattcaagaaaaaatcaaggaaaaa 16993137  T
Q  152 ttgaagcttgaagaacaagcatcaatggcggaagctagatctagatggtaactaactctctcaagaagagagagaaaa 229  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  16993138 ttgaagcttgaagaacaagcatcaatggcggaagcgagatctagatcgtaactaactctctcaagaagagagagaaaa 16993215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 240 - 360
Target Start/End: Original strand, 16988397 - 16988518
Alignment:
Q  240 tattaagaatcaaagaaagatagaaactgattcattaaaattgaaaagagtgtacatcaggttatttatacaagggaattgtactgtctaat-atgagaa 338  Q
    |||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||    
T  16988397 tattaagaatcaaagaaagatagaaactgattcattgaatttgaaaagagtgtacatctggttatttatacaagggaattgtactatctaataatgagaa 16988496  T
Q  339 tgtactactatacttaagctat 360  Q
     ||||| |||||||||||||||    
T  16988497 agtactgctatacttaagctat 16988518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 154 - 249
Target Start/End: Complemental strand, 14034086 - 14033990
Alignment:
Q  154 gaagcttgaagaacaagcatcaatggcggaagct-agatctagatggtaactaactctctcaagaagagagagaaaaactgataccatattaagaat 249  Q
    ||||||||||||| |||||||||||||||||||| || | | ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  14034086 gaagcttgaagaagaagcatcaatggcggaagcttaggtttggatcgtaacaaactctctcaagaagagagagaaaaactgataccatattaagaat 14033990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 154 - 250
Target Start/End: Complemental strand, 17127529 - 17127432
Alignment:
Q  154 gaagcttgaagaacaagcatcaatggcggaagcta-gatctagatggtaactaactctctcaagaagagagagaaaaactgataccatattaagaatc 250  Q
    ||||||||||||| |||| |||||||||||||| | ||  | ||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  17127529 gaagcttgaagaagaagcttcaatggcggaagcgaagaattggatcgtaccaaactctctcaagaagagagagaaaaactgataccatattaagaatc 17127432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 154 - 226
Target Start/End: Original strand, 19806659 - 19806732
Alignment:
Q  154 gaagcttgaagaacaagcatcaatggcggaagctagat-ctagatggtaactaactctctcaagaagagagaga 226  Q
    ||||||||||||||||| |||||||| |||||| |||  || ||| ||||||||||||||||||||||||||||    
T  19806659 gaagcttgaagaacaagaatcaatggtggaagcgagaaactggatcgtaactaactctctcaagaagagagaga 19806732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 244
Target Start/End: Complemental strand, 15755156 - 15755122
Alignment:
Q  210 tctcaagaagagagagaaaaactgataccatatta 244  Q
    |||||||||||||||| ||||||||||||||||||    
T  15755156 tctcaagaagagagagtaaaactgataccatatta 15755122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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