View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4171_low_9 (Length: 321)
Name: NF4171_low_9
Description: NF4171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4171_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 7 - 314
Target Start/End: Complemental strand, 21240822 - 21240515
Alignment:
| Q |
7 |
gggaccacattcaaacacaacgtctttagcttcaattagtctgccaccatctttagatacatagggaaattcagagccattgcgcttcgcacattcacag |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
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| T |
21240822 |
gggaccacattcaaacacaacgtctttagcttcaattagtcttccaccatctttagatacatatggaaattcagagccattgctcttcgcacattcacag |
21240723 |
T |
|
| Q |
107 |
gtgtttggatcaatacatttgccattgcatttgcatccagaggcactcacaggaagcctaacactttttgcaaccttcagagacttcaaatatttggaac |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
21240722 |
gtgtttggatcaatacatttgccattgcatttgcatccagaggcactcacaggaagcttaacactttttgcaaccttcagagacttcaaatatttgaaac |
21240623 |
T |
|
| Q |
207 |
ctgggggaggtggaacaggtgggtcatcaaccaaatttgtagctggaatgggcacagtttcctgaccgttagtgatatcctcacagatcaaccctcgtat |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
21240622 |
ctgggggaggtggaacaggtgggtcatcaaccaaatttgtagctggaatgggtacattttcctgtccgttagtgatatcctcacagatcaaccctcgtat |
21240523 |
T |
|
| Q |
307 |
ctctgctg |
314 |
Q |
| |
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||||||| |
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| T |
21240522 |
ttctgctg |
21240515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 7 - 314
Target Start/End: Original strand, 21287886 - 21288193
Alignment:
| Q |
7 |
gggaccacattcaaacacaacgtctttagcttcaattagtctgccaccatctttagatacatagggaaattcagagccattgcgcttcgcacattcacag |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
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| T |
21287886 |
gggaccacattcaaacacaacgtctttagcttcaattagtctaccaccatctttagatacataaggaaattcagagccattgcacttcgcacattcacag |
21287985 |
T |
|
| Q |
107 |
gtgtttggatcaatacatttgccattgcatttgcatccagaggcactcacaggaagcctaacactttttgcaaccttcagagacttcaaatatttggaac |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
21287986 |
gtgtttggatcaatacatttgccattgcatttgcatccagaggcactcacaggaagcataacactttttgcaaccttcagagacttcaaatatttgaaac |
21288085 |
T |
|
| Q |
207 |
ctgggggaggtggaacaggtgggtcatcaaccaaatttgtagctggaatgggcacagtttcctgaccgttagtgatatcctcacagatcaaccctcgtat |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
21288086 |
ctgggggaggtggaacaggtgggtcatcaaccaaatttgtagctggaatgggaacaaattcctgaccgttagtgatatcctcacagatcaaccctcgtat |
21288185 |
T |
|
| Q |
307 |
ctctgctg |
314 |
Q |
| |
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||||||| |
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| T |
21288186 |
ttctgctg |
21288193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 106; Significance: 5e-53; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 47 - 208
Target Start/End: Original strand, 32419729 - 32419890
Alignment:
| Q |
47 |
ctgccaccatctttagatacatagggaaattcagagccattgcgcttcgcacattcacaggtgtttggatcaatacatttgccattgcatttgcatccag |
146 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| | |||||||||||||||| |
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| T |
32419729 |
ctgccaccatctttagatacatagggaaattcagagccattgcgctttgcacattcacaggtgtttggatcagtacatttgtctttgcatttgcatccag |
32419828 |
T |
|
| Q |
147 |
aggcactcacaggaagcctaacactttttgcaaccttcagagacttcaaatatttggaacct |
208 |
Q |
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|||| ||| |||||| | || | |||||||||||||||||||||||||||| || ||||| |
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| T |
32419829 |
aggcgctctcaggaatttttacgccttttgcaaccttcagagacttcaaatatgtgaaacct |
32419890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 206 - 299
Target Start/End: Original strand, 32421005 - 32421098
Alignment:
| Q |
206 |
cctgggggaggtggaacaggtgggtcatcaaccaaatttgtagctggaatgggcacagtttcctgaccgttagtgatatcctcacagatcaacc |
299 |
Q |
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|||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||| |
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| T |
32421005 |
cctgggggcggcggaacaggtgggtcatcaaccaaatttgtagctggaatgggcacagcttcctgaccgttagtgatatcatcacatatcaacc |
32421098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 32419617 - 32419659
Alignment:
| Q |
7 |
gggaccacattcaaacacaacgtctttagcttcaattagtctg |
49 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32419617 |
gggaccacattcaaacacaacgtctttagcttcaattaatctg |
32419659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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