View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4172_high_4 (Length: 524)

Name: NF4172_high_4
Description: NF4172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4172_high_4
NF4172_high_4
[»] chr7 (3 HSPs)
chr7 (153-513)||(22559400-22559761)
chr7 (16-91)||(22559824-22559899)
chr7 (339-395)||(34334668-34334724)
[»] chr4 (3 HSPs)
chr4 (164-255)||(7277259-7277350)
chr4 (164-219)||(7302024-7302079)
chr4 (339-375)||(51874823-51874859)
[»] chr2 (3 HSPs)
chr2 (328-378)||(37965814-37965864)
chr2 (334-375)||(43284046-43284087)
chr2 (328-372)||(41811934-41811978)
[»] chr8 (1 HSPs)
chr8 (283-368)||(10242686-10242769)
[»] chr3 (1 HSPs)
chr3 (283-375)||(54254020-54254113)


Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 153 - 513
Target Start/End: Complemental strand, 22559761 - 22559400
Alignment:
Q  153 gttactacagctttgttcatggaagattaccatatgagaatttgaaaccagacccaattctaaggaacctcttgctaagtctaccttataggaaactagt 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  22559761 gttactacagctttgttcatggaagattaccatatgagaatttgaaaccagacccaattctaaggaacctcttgctaagcctaccttataggaaactagt 22559662  T
Q  253 aagnnnnnnnnnn-atttccacactccctcaaatttaatacctaaagtatataaatattataagtagttcgaaaagatataaaatcggtcaatttagtct 351  Q
    |||           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22559661 aagtttttttttttatttccacactccctcaaatttaatacctaaagtatataaatattataagtagttcgaaaagatataaaatcggtcaatttagtct 22559562  T
Q  352 ctgctattaagatgttagagactatatcgacaaattttctcatattataatgattgaattgacggattttatatactgtaacgactacttacataactaa 451  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  22559561 ctgctattaagatgttagagactatattgacaaattttctcatattataatgattgaattgaccgattttatatactgtaacgactacttacataactaa 22559462  T
Q  452 attgatagtttattcaaaattgaatcaaatctaatgtgatcttttcattgtgttttgcctat 513  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22559461 attgatggtttattcaaaattgaatcaaatctaatgtgatcttttcattgtgttttgcctat 22559400  T

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Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 16 - 91
Target Start/End: Complemental strand, 22559899 - 22559824
Alignment:
Q  16 aatatcacaggtacatgactttctttttcaaactttttatacatcatctcttctaaattagtaactattttatata 91  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  22559899 aatatcacaggtacatgactttctttttcaaactttttatacatcatcacttctaaattagtaactattttatata 22559824  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 339 - 395
Target Start/End: Original strand, 34334668 - 34334724
Alignment:
Q  339 gtcaatttagtctctgctattaagatgttagagactatatcgacaaattttctcata 395  Q
    |||||||||||   || |||||||||||||||||||||||  || ||||||||||||    
T  34334668 gtcaatttagttaatgttattaagatgttagagactatattaactaattttctcata 34334724  T

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Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 164 - 255
Target Start/End: Original strand, 7277259 - 7277350
Alignment:
Q  164 tttgttcatggaagattaccatatgagaatttgaaaccagacccaattctaaggaacctcttgctaagtctaccttataggaaactagtaag 255  Q
    |||||||||||||||||||| |||||||| |||||||||||||| ||| | ||||| || ||||| ||||| || || |||||||| |||||    
T  7277259 tttgttcatggaagattaccttatgagaacttgaaaccagaccctattttgaggaatctgttgctgagtcttccctacaggaaacttgtaag 7277350  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 164 - 219
Target Start/End: Complemental strand, 7302079 - 7302024
Alignment:
Q  164 tttgttcatggaagattaccatatgagaatttgaaaccagacccaattctaaggaa 219  Q
    ||||||||||| |||||||| |||| ||| ||||||||||||||| ||||||||||    
T  7302079 tttgttcatgggagattaccttatgtgaacttgaaaccagacccagttctaaggaa 7302024  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 339 - 375
Target Start/End: Complemental strand, 51874859 - 51874823
Alignment:
Q  339 gtcaatttagtctctgctattaagatgttagagacta 375  Q
    ||||||||| |||||| ||||||||||||||||||||    
T  51874859 gtcaatttaatctctgttattaagatgttagagacta 51874823  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 328 - 378
Target Start/End: Complemental strand, 37965864 - 37965814
Alignment:
Q  328 atataaaatcggtcaatttagtctctgctattaagatgttagagactatat 378  Q
    |||||||||| ||||||||||||| ||| ||||| |||||||||| |||||    
T  37965864 atataaaatctgtcaatttagtctatgcaattaatatgttagagagtatat 37965814  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 375
Target Start/End: Original strand, 43284046 - 43284087
Alignment:
Q  334 aatcggtcaatttagtctctgctattaagatgttagagacta 375  Q
    |||| ||| |||||||| ||||||||||||||||||||||||    
T  43284046 aatccgtcgatttagtccctgctattaagatgttagagacta 43284087  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 328 - 372
Target Start/End: Complemental strand, 41811978 - 41811934
Alignment:
Q  328 atataaaatcggtcaatttagtctctgctattaagatgttagaga 372  Q
    ||||||||||  ||||||||| ||||||||| |||||||||||||    
T  41811978 atataaaatccatcaatttagactctgctatcaagatgttagaga 41811934  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 368
Target Start/End: Complemental strand, 10242769 - 10242686
Alignment:
Q  283 aatttaatacctaaagtatataaatattataagtagttcgaaaagatataaaatcggtcaatttagtctctgctattaagatgtta 368  Q
    ||||||| | ||||||||||||||||| |||| |||||  |||  |||||||||  ||||||||||||| | ||||||||||||||    
T  10242769 aatttaaaatctaaagtatataaatataataa-tagttt-aaagtatataaaattcgtcaatttagtctatactattaagatgtta 10242686  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 375
Target Start/End: Complemental strand, 54254113 - 54254020
Alignment:
Q  283 aatttaatacctaaagtatataaatattataagtagt-tcgaaaagatataaaatcggtcaatttagtctctgctattaagatgttagagacta 375  Q
    |||||| | |||||||| ||||||||| ||||||||| || || | || | ||||| |||||||| ||| || ||||||||||||||| |||||    
T  54254113 aatttagtccctaaagtgtataaatataataagtagtctctaacacatttgaaatccgtcaatttcgtcccttctattaagatgttagggacta 54254020  T

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