View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4172_low_1 (Length: 879)
Name: NF4172_low_1
Description: NF4172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4172_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 21 - 416
Target Start/End: Complemental strand, 33543369 - 33542974
Alignment:
| Q |
21 |
ttgaaacacaagcagaaaccctgcaattacaagaagttatgttaccttaaacaaacataattttttcgcaagaatcaactgaattcaagcattataactc |
120 |
Q |
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| T |
33543369 |
ttgaaacacaagcagaaaccctgcaattacaagaagttatgttaccttaaacaaacataattttttcgcaagaatcaactgaattcaagcattataactc |
33543270 |
T |
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| Q |
121 |
aacactatgaaattcattatttcacaggaaaccaacaaaaagtacaagaaaagttcaatcataacaaaataccatgaaaactgaagaacttccccaacag |
220 |
Q |
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| T |
33543269 |
aacactatgaaattcattatttcacaggaaaccaacaaaaagtacaagaaaagttcaatcataacaaaataccatgaaaactgaagaacttccccaacag |
33543170 |
T |
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| Q |
221 |
attggatgataaatcagtgagtgctattaatatgagttaagtagtgtttagactaaattgtttttctttctgcttcaaccaaagccaagtaaatttgatt |
320 |
Q |
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| T |
33543169 |
attggatgataaatcagtgagtgctattaatatgagttaagtagtgtttatactaaagtgtttttctttctgcttcaaccaaagccaagtaaatttgatt |
33543070 |
T |
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| Q |
321 |
gttttagacttttagtagcagatatttttcacttgcttccaagatcaccaaacaactcacaatgaatcttccacaaataaaccaatttattttttg |
416 |
Q |
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| T |
33543069 |
gttttagacttttagtagcagatatttttcacttgcttccaagatcaccaaacaactcacaatgaatcttccacaaataaaccaatttattttttg |
33542974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 479 - 879
Target Start/End: Complemental strand, 33542910 - 33542512
Alignment:
| Q |
479 |
cttctatacctcacaccataatagaaaaaatccaaaagatattcagaaagtggacaactacaagtctccaaatcctacagaagc--atagaaactatttt |
576 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
33542910 |
cttctatacctcacaccataatggaaaaaatccaaaagatattcagaaagtggacaactacaagtctccaaatcctacagaagcgcatagaaactatttt |
33542811 |
T |
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| Q |
577 |
cctatgtgtcagcttttctcttcccttctaaacacaagttagcttgtgataaaggttgaagtgaagcatgagagcaagtgaagaaaaaaccaaaactcac |
676 |
Q |
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| T |
33542810 |
cctatgtgtcagcttttctcttcccttctaaacacaagttagcttgtgataagggttgaagtgaagcatga----aagtgaagaaaaaaccaaaactcac |
33542715 |
T |
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| Q |
677 |
actgttttcttctctctcacaaactgacatttcatcattctccctcataaatgacttgccaaattccctnnnnnnnnntgattatttaatctacctttca |
776 |
Q |
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| T |
33542714 |
actgttttcttctctctcacaaactgacatttcatcattctccctcataaatgacttgccaaattccttaaaaaaaaatgattatttaatctacctttca |
33542615 |
T |
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| Q |
777 |
tattccttatatttaatttctctgtctggatggtccttaaagagaagatgcagttttcttatgcaaggaaaaagcaaaagaaagattcttgtaatgaagg |
876 |
Q |
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| T |
33542614 |
tattccttatatttaatttctctgtctggatggtccttaaagagaagatgcagttttcttatgcaaggaaaaagcaaaagaaagattcttgtaatgaagg |
33542515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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