View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4172_low_10 (Length: 332)

Name: NF4172_low_10
Description: NF4172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4172_low_10
NF4172_low_10
[»] chr3 (9 HSPs)
chr3 (1-314)||(10377604-10377920)
chr3 (92-270)||(10441017-10441185)
chr3 (181-305)||(10136868-10136992)
chr3 (181-314)||(10075308-10075439)
chr3 (181-248)||(10102401-10102468)
chr3 (181-248)||(10213324-10213391)
chr3 (206-254)||(10221426-10221474)
chr3 (12-70)||(10658566-10658624)
chr3 (50-97)||(10217306-10217356)
[»] scaffold0045 (1 HSPs)
scaffold0045 (221-293)||(85887-85959)
[»] chr4 (2 HSPs)
chr4 (13-97)||(25793951-25794038)
chr4 (277-314)||(25793733-25793770)
[»] chr5 (2 HSPs)
chr5 (206-254)||(26816784-26816832)
chr5 (50-97)||(26796777-26796827)


Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 10377604 - 10377920
Alignment:
Q  1 actgaatacccaagtaaatctaatcctgtggcaatgacggccgttttgctcctctcaaatatttttacaaga---atcattacaataacatgccccactt 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||    
T  10377604 actgaatacccaagtaaatctaatcctgtggcaatgacggccgttttgctcctctcaaatatttttacaagaagaatcattacaataacatgccccactt 10377703  T
Q  98 aggcctttcatgaaaatgagacattacatacatgatgattaagataattcaacagttggagtgctaaaataaaatgtctattgagagttatgaaacggag 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10377704 aggcctttcatgaaaatgagacattacatacatgatgattaagataattcaacagttggagtgctaaaataaaatgtctattgagagttatgaaacggag 10377803  T
Q  198 taaccgatgagagttactcatagagtgagtggaggatcgcgaccataccccctacatgattatagggtttataatagctttcaaagcgaacattccgaag 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10377804 taaccgatgagagttactcatagagtgagtggaggatcgcgaccataccccctacatgattatagggtttataatagctttcaaagcgaacattccgaag 10377903  T
Q  298 agagaggaccctttaag 314  Q
    |||||||||||||||||    
T  10377904 agagaggaccctttaag 10377920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 92 - 270
Target Start/End: Original strand, 10441017 - 10441185
Alignment:
Q  92 ccacttaggcctttcatgaaaatgagacattacatacatgatgattaagataattcaacagttggagtgctaaaataaaatgtctattgagagttatgaa 191  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||| |||| |||||||||||||||  |||||||||||    
T  10441017 ccacttaggcctttcctgaaaatgagacattacatacatgatgattacgataattcaacaattggattgctgaaataaaatgtctataaagagttatgaa 10441116  T
Q  192 acggagtaaccgatgagagttactcatagagtgagtggaggatcgcgaccataccccctacatgattatagggtttata 270  Q
    ||||||| || ||          ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  10441117 acggagtcactga----------tcatagagtgagtggagtatcgcgaccatacaccctacatgattatagggtttata 10441185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 181 - 305
Target Start/End: Complemental strand, 10136992 - 10136868
Alignment:
Q  181 agagttatgaaacggagtaaccgatgagagttactcatagagtgagtggaggatcgcgaccataccccctacatgattatagggtttataatagctttca 280  Q
    |||| |||||||||||| ||| || ||||||||||||  |||||||||||||||||||||||||| ||||||||||| ||||||||||| ||  | ||||    
T  10136992 agagctatgaaacggagcaactgacgagagttactcaaggagtgagtggaggatcgcgaccatactccctacatgataatagggtttatgattaccttca 10136893  T
Q  281 aagcgaacattccgaagagagagga 305  Q
    |||| |||||||| |||||||||||    
T  10136892 aagcaaacattccaaagagagagga 10136868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 181 - 314
Target Start/End: Complemental strand, 10075439 - 10075308
Alignment:
Q  181 agagttatgaaacggagtaaccgatgagagttactcatagagtgagtggaggatcgcgaccataccccctacatgattatagggtttataatagctttca 280  Q
    |||| |||||||||||||||| || |||| ||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||  ||  | ||||    
T  10075439 agagctatgaaacggagtaactgacgagatttactcatagagtgagtggaggaccgcgaccgtaccccctacatgaatatagggtttacgattaccttca 10075340  T
Q  281 aagcgaacattccgaagagagaggaccctttaag 314  Q
    |||| ||||||||  |||||||||| ||||||||    
T  10075339 aagcaaacattcc--agagagaggatcctttaag 10075308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 181 - 248
Target Start/End: Complemental strand, 10102468 - 10102401
Alignment:
Q  181 agagttatgaaacggagtaaccgatgagagttactcatagagtgagtggaggatcgcgaccatacccc 248  Q
    |||| ||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  10102468 agagctatgaaacggattaaccgacgagagttactcatagagtgagtggaggatcacgaccatacccc 10102401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 181 - 248
Target Start/End: Complemental strand, 10213391 - 10213324
Alignment:
Q  181 agagttatgaaacggagtaaccgatgagagttactcatagagtgagtggaggatcgcgaccatacccc 248  Q
    |||| ||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  10213391 agagctatgaaacggattaaccgacgagagttactcatagagtgagtggaggatcacgaccatacccc 10213324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 254
Target Start/End: Complemental strand, 10221474 - 10221426
Alignment:
Q  206 gagagttactcatagagtgagtggaggatcgcgaccataccccctacat 254  Q
    |||||||||||||||||||| |||||||||||||||||||||| |||||    
T  10221474 gagagttactcatagagtgattggaggatcgcgaccataccccttacat 10221426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 10658624 - 10658566
Alignment:
Q  12 aagtaaatctaatcctgtggcaatgacggccgttttgctcctctcaaatatttttacaa 70  Q
    |||||||||||||||||||||| ||||  || |||||||||||||||| ||||||||||    
T  10658624 aagtaaatctaatcctgtggcagtgacaaccattttgctcctctcaaacatttttacaa 10658566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 97
Target Start/End: Complemental strand, 10217356 - 10217306
Alignment:
Q  50 tcctctcaaatatttttaca---agaatcattacaataacatgccccactt 97  Q
    |||||||||| |||||||||   ||||||||||||||||||||| ||||||    
T  10217356 tcctctcaaacatttttacaggaagaatcattacaataacatgctccactt 10217306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 221 - 293
Target Start/End: Complemental strand, 85959 - 85887
Alignment:
Q  221 agtgagtggaggatcgcgaccataccccctacatgattatagggtttataatagctttcaaagcgaacattcc 293  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| ||  | |||||||| ||||||||    
T  85959 agtgagtggaggatcgcgaccataccccctacataattatagggtttatgattaccttcaaagcaaacattcc 85887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 25794038 - 25793951
Alignment:
Q  13 agtaaatctaatcctgtggcaatgacggccgttttgctcctctcaaatatttttaca---agaatcattacaataacatgccccactt 97  Q
    |||||||| |||||||||||||| ||  ||  ||||||||||||||| |||||||||   ||||||||||||||||||||||| ||||    
T  25794038 agtaaatccaatcctgtggcaattacaaccaatttgctcctctcaaacatttttacaagaagaatcattacaataacatgccctactt 25793951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 314
Target Start/End: Complemental strand, 25793770 - 25793733
Alignment:
Q  277 ttcaaagcgaacattccgaagagagaggaccctttaag 314  Q
    ||||||||||||||||| ||||||||||| ||||||||    
T  25793770 ttcaaagcgaacattccaaagagagaggatcctttaag 25793733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 254
Target Start/End: Complemental strand, 26816832 - 26816784
Alignment:
Q  206 gagagttactcatagagtgagtggaggatcgcgaccataccccctacat 254  Q
    |||||||||||||||||||| |||||||||||||||||||||| |||||    
T  26816832 gagagttactcatagagtgattggaggatcgcgaccataccccttacat 26816784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 97
Target Start/End: Complemental strand, 26796827 - 26796777
Alignment:
Q  50 tcctctcaaatatttttaca---agaatcattacaataacatgccccactt 97  Q
    |||||||||| |||||||||   ||||||||||||||||||||| ||||||    
T  26796827 tcctctcaaacatttttacaggaagaatcattacaataacatgctccactt 26796777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University