View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4172_low_2 (Length: 590)
Name: NF4172_low_2
Description: NF4172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4172_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 536; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 1 - 585
Target Start/End: Complemental strand, 2627180 - 2626596
Alignment:
| Q |
1 |
caatgtccctctttgagtcagnnnnnnnttatcactgatgctataagaagattgaagccaacagttcctgatctggaaggacattctgtacagttgtttc |
100 |
Q |
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||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2627180 |
caatgtccctctttgagtcagaaaaaaattaccactgatgctataagaagattgaagccaacagttcctgatctggaaggacattctgtacagttgtttc |
2627081 |
T |
|
| Q |
101 |
agaataaaattttgattattccagacgctgcagctaccagtggtaaggctgaactctttatgcattctcctgccttaagcccgttccacatttggggaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2627080 |
agaataaaattttgattattccagacgctgcagctaccagtggtaaggctgaactctttatgcattctcctgccttaagcccgttccacatttggggaaa |
2626981 |
T |
|
| Q |
201 |
gaatctaaagttggaaaggaagaaccatccgagacttaaaaatatattagagcatggaatggttgatatgtgctttgaaaattgttcaagaatgagtgaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
2626980 |
gaatctaaagttggaaaggaagaaccatccgagacttaaaaatatattagagcatggaatggttgatatgtgctttgaaaattgttctagaatgagtgaa |
2626881 |
T |
|
| Q |
301 |
gctcatttttctatcgcttccaatttcaagactcatttctctaggttgcctgacatagaaaccactatatgccttaacagaaaaagaaagcgaccagata |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2626880 |
gctcatttttctatcgcttccaatttcaagactcatttctctagtttgcctgacatagaaaccactatatgccttaacagaaaaagaaagcgaccagata |
2626781 |
T |
|
| Q |
401 |
aacatgctttatgtcctcaaattggcagagctcaagaaaatgaaggttttgcatacatctcaaaaaataccagacctaggatctcacacatcagtactct |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2626780 |
aacatgctttatgtcctcaaattggcagagctcaagaaaatgaaggttttgcatacatctcaaaaaataccagacctaggatctcaaacatcagtactct |
2626681 |
T |
|
| Q |
501 |
tgaaccagaagaaagtattcgaaaagacattctgtcctgcacacactttcctgaaattagcataatcttcactgatgatgtccat |
585 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||| |
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| T |
2626680 |
tgaaccagaagaaagtattcgaaaagacattctgtcctgcacacactttcatgaaactagcataatcttcactgatgaggtccat |
2626596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 74 - 338
Target Start/End: Complemental strand, 2638837 - 2638573
Alignment:
| Q |
74 |
tggaaggacattctgtacagttgtttcagaataaaattttgattattccagacgctgcagctaccagtggtaaggctgaactctttatgcattctcctgc |
173 |
Q |
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|||||||||||||| ||| |||||||||||||||| ||| |||||||||||| ||| || |||| |||||||||||||||||||||||||||||||||| |
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| T |
2638837 |
tggaaggacattctataccgttgtttcagaataaactttggattattccagaggctccaactacgggtggtaaggctgaactctttatgcattctcctgc |
2638738 |
T |
|
| Q |
174 |
cttaagcccgttccacatttggggaaagaatctaaagttggaaaggaagaaccatccgagacttaaaaatatattagagcatggaatggttgatatgtgc |
273 |
Q |
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||||||||| ||||||||||||||||||||||||||||| |||||| ||||| ||||| | ||||||||||||||||||| ||||| |||||||| ||| |
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| T |
2638737 |
cttaagcccattccacatttggggaaagaatctaaagttagaaaggcagaacagtccgatatttaaaaatatattagagcacggaatagttgatatctgc |
2638638 |
T |
|
| Q |
274 |
tttgaaaattgttcaagaatgagtgaagctcatttttctatcgcttccaatttcaagactcattt |
338 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2638637 |
tttgaaaattgttctagaatgagtgaagctcatttttctatcgcttccaatttcaagactcattt |
2638573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 340 - 442
Target Start/End: Complemental strand, 2638526 - 2638424
Alignment:
| Q |
340 |
tctaggttgcctgacatagaaaccactatatgccttaacagaaaaagaaagcgaccagataaacatgctttatgtcctcaaattggcagagctcaagaaa |
439 |
Q |
| |
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||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||| | ||||||| |
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| T |
2638526 |
tctaggttgcctgacatagaaacgactatgtgcctcgacagaaaaagaaagcgaccagataaacatgctttatgttctcaaattcgcagggagcaagaaa |
2638427 |
T |
|
| Q |
440 |
atg |
442 |
Q |
| |
|
||| |
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|
| T |
2638426 |
atg |
2638424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 162 - 268
Target Start/End: Original strand, 44003835 - 44003941
Alignment:
| Q |
162 |
gcattctcctgccttaagcccgttccacatttggggaaagaatctaaagttggaaaggaagaaccatccgagacttaaaaatatattagagcatggaatg |
261 |
Q |
| |
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||||||||||| ||||||||| |||||||| |||||||||| |||||||||||||||| | | || || ||| || ||||| ||||||| ||||| ||| |
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| T |
44003835 |
gcattctcctggcttaagcccattccacatatggggaaagagtctaaagttggaaaggcatagccttcttagattttaaaatttattagatcatggcatg |
44003934 |
T |
|
| Q |
262 |
gttgata |
268 |
Q |
| |
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||||||| |
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| T |
44003935 |
gttgata |
44003941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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