View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4172_low_3 (Length: 532)
Name: NF4172_low_3
Description: NF4172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4172_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 365; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 2627156 - 2627528
Alignment:
| Q |
1 |
ttttctgactcaaagagggacattgatgcgccttcacattatcacctaatgataaacaccataattttttaatatcaagatactattcaacataggaatg |
100 |
Q |
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| T |
2627156 |
ttttctgactcaaagagggacattgatgcaccttcacattatcacctaatgataaacaccataattttttaatatcaagatactattcaacataggaatg |
2627255 |
T |
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| Q |
101 |
agatagaagcttcgttatgtcaataaaatggtaaatattgacaaattaatatcatatagtataatactttttccattttaaattatggataatcatcaca |
200 |
Q |
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| T |
2627256 |
agatagaagcttcgttatgtcaataaaatggtaaatattgacaaattaatatcatatagtataatactttttccattttaaattatggataatcatcaca |
2627355 |
T |
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| Q |
201 |
agcatggttaacaaactcacaagaggactagtaaacaagtttgtggtatgtttctaggtaggaaaatctagttgaatcacatacatactcaattttggga |
300 |
Q |
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| T |
2627356 |
agcatggttaacaaactcacaagaggactagtaaactagtttgtggtatgtttctaggtaggaaaatctagttgaatcacatacatactcaattttggga |
2627455 |
T |
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| Q |
301 |
aaacttggttgaaattgtgtggactcgttcaaactcaatatcacaaatctatgcccgtgtaatcaagtttgat |
373 |
Q |
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| T |
2627456 |
aaacttggttgaaattgtgtggactcgttcaaactcaatatcacaaatctatgcccgtgtaatcaagtttgat |
2627528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 418 - 505
Target Start/End: Original strand, 2627573 - 2627660
Alignment:
| Q |
418 |
tcaccgtatgattctacttctttgctccatctaaatgcttccctgccaaccaacccacccctgccatcattcccatccaactcttgaa |
505 |
Q |
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| T |
2627573 |
tcaccgtatgattctacttctttgctccatctaaatgcttccctgccaaccaaaccacccctgccatcattcccatccaactcgtgaa |
2627660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 497 - 531
Target Start/End: Complemental strand, 2626685 - 2626651
Alignment:
| Q |
497 |
actcttgaaccagaggaaagtattcgaaaagacat |
531 |
Q |
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|||||||||||||| |||||||||||||||||||| |
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| T |
2626685 |
actcttgaaccagaagaaagtattcgaaaagacat |
2626651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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