View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4172_low_5 (Length: 439)
Name: NF4172_low_5
Description: NF4172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4172_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 33828622 - 33828851
Alignment:
| Q |
1 |
gataggccaatggttccagaggtaagaaagagctccaactgcatgaatgttgaaaggtttagcaaacttaagtaaaatacattttacaaaatattgatag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33828622 |
gataggccaatggttccagaggtaagaaagagctccaactgcatgaatgttgaaaggtttagcaaacttaagtaaaatacattatacaaaatattgatag |
33828721 |
T |
|
| Q |
101 |
aaaatattcaaggtgcagaaacataaaaggcacctgaattaggttattacgatggttgtcaatctgcaaaatggaagaacaaaaaattattcatattaca |
200 |
Q |
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| T |
33828722 |
aaaatattcaaggtgcagaaacataaaaggcacctgaattaggttattacgatggttgtcaagctgcaaaatggaagaacaaaaaattattcatattaca |
33828821 |
T |
|
| Q |
201 |
tgtcattcaccaaatacctattgttattac |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
33828822 |
tgtcattcaccaaatacctattgttattac |
33828851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 33839344 - 33839115
Alignment:
| Q |
1 |
gataggccaatggttccagaggtaagaaagagctccaactgcatgaatgttgaaaggtttagcaaacttaagtaaaatacattttacaaaatattgatag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33839344 |
gataggccaatggttccagaggtaagaaagagctccaactgcatgaatgttgaaaggtttagcaaacttaagtaaaatacattatacaaaatattgatag |
33839245 |
T |
|
| Q |
101 |
aaaatattcaaggtgcagaaacataaaaggcacctgaattaggttattacgatggttgtcaatctgcaaaatggaagaacaaaaaattattcatattaca |
200 |
Q |
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| T |
33839244 |
aaaatattcaaggtgcagaaacataaaaggcacctgaattaggttattacgatggttgtcaagctgcaaaatggaagaacaaaaaattattcatattaca |
33839145 |
T |
|
| Q |
201 |
tgtcattcaccaaatacctattgttattac |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
33839144 |
tgtcattcaccaaatacctattgttattac |
33839115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 242 - 424
Target Start/End: Original strand, 33829282 - 33829464
Alignment:
| Q |
242 |
ttgcaagtttcttacttgaatgttaatgtaatcttcggtatcatcgatatactctcgtaactttaaatgaaaagaaaaatgaaagtaattagactaaata |
341 |
Q |
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|||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33829282 |
ttgcaagtttcttacttgaatgttaatgtagtcttcggaatcatcgatatactctcgtaactttaaatgaaaagaaaaatgaaagtaattagactaaata |
33829381 |
T |
|
| Q |
342 |
tgatatattcagatgctatgaggtaaagctaccacaaacaaatttagagttgagacggagatgacacttaccgcggttaattt |
424 |
Q |
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| T |
33829382 |
tgatatattcagatgctatgaggtaaagctaccacaaacaaatttagagttgagacggagatgacactaaccgcggttaattt |
33829464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 242 - 424
Target Start/End: Complemental strand, 33838684 - 33838502
Alignment:
| Q |
242 |
ttgcaagtttcttacttgaatgttaatgtaatcttcggtatcatcgatatactctcgtaactttaaatgaaaagaaaaatgaaagtaattagactaaata |
341 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33838684 |
ttgcaagtttcttacttgaatgttaatgtagtcttcggaatcatcgatatactctcgtaactttaaatgaaaagaaaaatgaaagtaattagactaaata |
33838585 |
T |
|
| Q |
342 |
tgatatattcagatgctatgaggtaaagctaccacaaacaaatttagagttgagacggagatgacacttaccgcggttaattt |
424 |
Q |
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| T |
33838584 |
tgatatattcagatgctatgaggtaaagctaccacaaacaaatttagagttgagacggagatgacactaaccgcggttaattt |
33838502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 115 - 335
Target Start/End: Original strand, 33806724 - 33806945
Alignment:
| Q |
115 |
gcagaaacataaaaggcacctgaattaggttattacgatggttgtcaatctgcaaaatggaagaacaaaaaat-tattcatattacatgtcattcaccaa |
213 |
Q |
| |
|
||||||||||| |||| |||||||| || | ||||||||||||||||| ||||||||||||| ||||||||| ||||||| |||||| | |||||||| |
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|
| T |
33806724 |
gcagaaacatagaaggtacctgaataagctgattacgatggttgtcaagctgcaaaatggaaaaacaaaaaaaatattcatgttacatccccttcaccaa |
33806823 |
T |
|
| Q |
214 |
atacctattgttattactattnnnnnnnttgcaagtttcttacttgaatgttaatgtaatcttcggtatcatcgatatactctcgtaactttaaatgaaa |
313 |
Q |
| |
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||||||||||||||||| | | ||| || | ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
33806824 |
atacctattgttattaccagtaaataaactgctagctacttacttgaatgttaatgtaatcttcggtatcatcgatatactctcgcagctttaaatgaaa |
33806923 |
T |
|
| Q |
314 |
agaaaaatgaaagtaattagac |
335 |
Q |
| |
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|| |||| |||||||||||||| |
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|
| T |
33806924 |
aggaaaaggaaagtaattagac |
33806945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 115 - 335
Target Start/End: Original strand, 33866194 - 33866415
Alignment:
| Q |
115 |
gcagaaacataaaaggcacctgaattaggttattacgatggttgtcaatctgcaaaatggaagaacaaaaaat-tattcatattacatgtcattcaccaa |
213 |
Q |
| |
|
||||||||||| |||| |||||||| || | ||||||||||||||||| ||||||||||||| ||||||||| ||||||| |||||| | |||||||| |
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| T |
33866194 |
gcagaaacatagaaggtacctgaataagctgattacgatggttgtcaagctgcaaaatggaaaaacaaaaaaaatattcatgttacatccccttcaccaa |
33866293 |
T |
|
| Q |
214 |
atacctattgttattactattnnnnnnnttgcaagtttcttacttgaatgttaatgtaatcttcggtatcatcgatatactctcgtaactttaaatgaaa |
313 |
Q |
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||||||||||||||||| | | ||| || | ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
33866294 |
atacctattgttattaccagtaaataaactgctagctacttacttgaatgttaatgtaatcttcggtatcatcgatatactctcgcagctttaaatgaaa |
33866393 |
T |
|
| Q |
314 |
agaaaaatgaaagtaattagac |
335 |
Q |
| |
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|| |||| |||||||||||||| |
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|
| T |
33866394 |
aggaaaaggaaagtaattagac |
33866415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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