View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4173_high_10 (Length: 268)
Name: NF4173_high_10
Description: NF4173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4173_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 1135082 - 1134822
Alignment:
| Q |
1 |
tccattttctctccttcaaaatggaaccaaaatggagcaccattctgccagcaacctccatattctccagcttcgatgacctcaaatggatcacagcaga |
100 |
Q |
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| T |
1135082 |
tccattttctctccttcaaaatggaaccaaaatggagcaccattctgccagcaacctccatattctccagcttcgatgacctcaaatggatcacagcaga |
1134983 |
T |
|
| Q |
101 |
atttgatcatgaacttttcaccaagcggcccgttaccgtcgaaacagcaatcgacgacaacgatgtaaaaccgtctaaggtggatccattcctcggtgtc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1134982 |
atttgatcatgaacttttcaccaagcggcccgttaccgtcgaaacagcaatcgacgacaacgatgtaaaaccgtctaaggtggatccattcctcggtgtc |
1134883 |
T |
|
| Q |
201 |
ggcgatgtttgctctggtaacatcgccaatgccgccgattttcataatctggtctgtgctc |
261 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
1134882 |
ggcgatgtttgctctgataacatcgccaatgccgccgattttcataatctggtcagtgctc |
1134822 |
T |
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