View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4173_high_11 (Length: 267)
Name: NF4173_high_11
Description: NF4173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4173_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 4445739 - 4445490
Alignment:
| Q |
1 |
catatacttagatgggtcagggcacacatttgaaaccttattgcacaaaactgatgcttcaatgtatccacttccacaacagccactattaatatcttca |
100 |
Q |
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| T |
4445739 |
catatacttagatgggtcagggcacacatttgaaaccttattgcacaaaactgatgcttcaatgtatccacttccacaacagccactattaatatcttca |
4445640 |
T |
|
| Q |
101 |
aatcctaccacatataaataaattaaagaagaatgttagcagataaattaacctcctatatgtaccattacctaaaaaggatgttaaaatgta-nnnnnn |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
4445639 |
aatcctaccacatataaataaattaaagaagaatgttagcagataaattaacctcctatatgtactattacctaaaaaggatgttaaaatgtattttttt |
4445540 |
T |
|
| Q |
200 |
nnaaaataacaattacaaaccatattttttatgtgcttgaaccatattgg |
249 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4445539 |
tttaaataacaattacaaaccatattttttatgtgcttgaaccatattgg |
4445490 |
T |
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