View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4173_high_15 (Length: 250)
Name: NF4173_high_15
Description: NF4173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4173_high_15 |
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Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 3898843 - 3899083
Alignment:
| Q |
1 |
ctgtaacaaatctcaaccatccgatttttattgacggttgagatcaaactgtgtgataattgatcaaacagatctgaaccgttgaaccattattctataa |
100 |
Q |
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| T |
3898843 |
ctgtaacaaatctcaaccatccgatttttattgacggttgagatcaaactgtgtgataattgatcaaacaaatttgaactgttgaaccatttttctacaa |
3898942 |
T |
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| Q |
101 |
ttaagatcaactatcaactactgcgtgaaatagttacaacaggcgatataggtccatcatcaacccctcacatatatccataggctttcttaccattttg |
200 |
Q |
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| T |
3898943 |
ttaagatcaactatcaactactgcgcgaagtcgttacagcaggcgatataggtccatcatcaacccctcacatatatccataggcttgcttaccattttg |
3899042 |
T |
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| Q |
201 |
aatttgaattttggcataacttaaaacaatattagaataat |
241 |
Q |
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| T |
3899043 |
aatttgaattttggcataacttaaaacaatattagaataat |
3899083 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 79
Target Start/End: Complemental strand, 53141341 - 53141302
Alignment:
| Q |
39 |
tgagatcaaactgtgtgataattgatcaaacagatctgaac |
79 |
Q |
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| T |
53141341 |
tgagatcaaactgtgtga-aattgatcaaacaaatctgaac |
53141302 |
T |
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