View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4173_high_16 (Length: 238)
Name: NF4173_high_16
Description: NF4173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4173_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 14 - 221
Target Start/End: Complemental strand, 17279120 - 17278913
Alignment:
| Q |
14 |
cctgtggtaatgttacgtttttgaataattttcttgaagacacctaaattaaaatctaagattcttgattttggtataaacatattaagccatggatgag |
113 |
Q |
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| T |
17279120 |
cctgtggtaatgttgcgtttttgaataattttcttgaagacacctaaattaaaatctaagattcttgattttggtataaacatattaagccatggatgag |
17279021 |
T |
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| Q |
114 |
gaacatcccatagcccttgtgattgaagcttcaactctccgcttctcactctattcaagaactcaacaaatgacacannnnnnncataatgaaatccagg |
213 |
Q |
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| T |
17279020 |
gaacatcccatagcccttgtgattgaagcttcaactctccacttctcactctattcaagaactcaacaaatgacacatttttttcataatgaaatccagg |
17278921 |
T |
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| Q |
214 |
gatatagt |
221 |
Q |
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| T |
17278920 |
gatatagt |
17278913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 46 - 123
Target Start/End: Complemental strand, 17245961 - 17245884
Alignment:
| Q |
46 |
cttgaagacacctaaattaaaatctaagattcttgattttggtataaacatattaagccatggatgaggaacatccca |
123 |
Q |
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| T |
17245961 |
cttgaaaacaccttcattaaaatctgagattctagattttggtatgaacatattcaaccaaggatgaggaacatccca |
17245884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 46 - 220
Target Start/End: Complemental strand, 52446104 - 52445930
Alignment:
| Q |
46 |
cttgaagacacctaaattaaaatctaagattcttgattttggtataaacatattaagccatggatgaggaacatcccatagcccttgtgattgaagcttc |
145 |
Q |
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| T |
52446104 |
cttgaatacacctgaattaaaatccaatatttgagattttggtataaataaattaagccatgggtgaggaacttcccacaatccttgtgactgaagcttc |
52446005 |
T |
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| Q |
146 |
aactctccgcttctcactctattcaagaactcaacaaatgacacannnnnnncataatgaaatccagggatatag |
220 |
Q |
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| T |
52446004 |
aactctccacttcggactctattcaagaactcaacatatgagacctttttctcataatgaagtccagggatatag |
52445930 |
T |
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