View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4173_high_5 (Length: 359)
Name: NF4173_high_5
Description: NF4173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4173_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 344
Target Start/End: Complemental strand, 2598614 - 2598270
Alignment:
| Q |
18 |
aacagcaacgcagcgacaaacacaaatggccttcgggcatagcttgcatcctcagtgactctaatgttcagcacaattgaaatcatgaaagtaatgaaga |
117 |
Q |
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| T |
2598614 |
aacagcaacatagcgacaaacacaaatggctttcgggcatagcttgcatcctcagtgactttaatgttcagcacaattggaatcatgaaagtaatgaaga |
2598515 |
T |
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| Q |
118 |
accttttgacgcggaagcattggctt------------------tgcagctgaacaggttttgtgcaaacgtaaatattaaaagtagatcagtataggca |
199 |
Q |
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| T |
2598514 |
accttttgacgcggaagcattggcttcacgctagggattcactttgcagctgaacaggttttgtgcaaacgtaaatattaaaagtagatcagtataggca |
2598415 |
T |
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| Q |
200 |
ttcccgtagaaagtagaaacagcaacaaattagcgcattttttaggtaagcatgctattttaaatggggaaggtgtttggattgaagatattccatattt |
299 |
Q |
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| T |
2598414 |
ttgccgtagaaagtagaaacagcaacaaattagcgcattttttaggtaagcatgctattttaaatggggaagatgtttggattgaagatatttcatattt |
2598315 |
T |
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| Q |
300 |
cttgatatatcctttagtacatgacctagcccatttggacctttg |
344 |
Q |
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| T |
2598314 |
cttgatacatcctttactacatgacctagcccatctggacctttg |
2598270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 262 - 344
Target Start/End: Complemental strand, 2583046 - 2582964
Alignment:
| Q |
262 |
aatggggaaggtgtttggattgaagatattccatatttcttgatatatcctttagtacatgacctagcccatttggacctttg |
344 |
Q |
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| T |
2583046 |
aatggggaaggtgtttggattgaagatattccatatttctttatacatcctttggtacatgacctagcccatttggacctttg |
2582964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 213 - 277
Target Start/End: Complemental strand, 2583836 - 2583772
Alignment:
| Q |
213 |
tagaaacagcaacaaattagcgcattttttaggtaagcatgctattttaaatggggaaggtgttt |
277 |
Q |
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|||||||| |||| ||||||| |||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
2583836 |
tagaaacaacaaccaattagcccattttttagctaagtatgctattttaaatggggaaggtgttt |
2583772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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