View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4173_high_8 (Length: 304)
Name: NF4173_high_8
Description: NF4173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4173_high_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 34290008 - 34289723
Alignment:
| Q |
1 |
aaaataaagggcatgtggcaactattagcttcgataaacttgattgtgtatcactttcaagcattccaaagcttgtgagtatttgttcagattcactatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |
|
|
| T |
34290008 |
aaaataaagggcatgtggcaactattagcttcaataaacttgattgtgtatcactttcaagccttccaaagcttgtgagtatttgttcagattcactttg |
34289909 |
T |
|
| Q |
101 |
gttagaatgtccatccttgaagcaatttgatattgaggattgtcctatcttggagatgtatttcttaccaaccaatattgatgcaaagcatgacaacctc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34289908 |
gttagaatgtccatccttgaagcaatttgatattgaggattgtcctatcttggagatgtatttcttaccaaccaatattgatgcaaagcatgacaacctc |
34289809 |
T |
|
| Q |
201 |
aataacgcaaaagatgttggttttcaaagtttccaagaaaacaactcaaggtcttcaagttggtcctctagaaatgatacctaaat |
286 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34289808 |
aataacgtaaaagatgttggttttcaaagtttccaagaaaacaactcaaggtcttcaagttggtcctctagaaatgatacctaaat |
34289723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 145
Target Start/End: Original strand, 34374392 - 34374473
Alignment:
| Q |
64 |
ttccaaagcttgtgagtatttgttcagattcactatggttagaatgtccatccttgaagcaatttgatattgaggattgtcc |
145 |
Q |
| |
|
||||||||||||||| ||||||||||||||| | |||||||| ||||||||||| | ||||| | ||||| |||||||| |
|
|
| T |
34374392 |
ttccaaagcttgtgaatatttgttcagattctgttgagttagaatatccatccttgagggaatttaagattgatgattgtcc |
34374473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 3 - 172
Target Start/End: Complemental strand, 15894017 - 15893848
Alignment:
| Q |
3 |
aataaagggcatgtggcaactattagcttcgataaacttgattgtgtatcactttcaagcattccaaagcttgtgagtatttgttcagattcactatggt |
102 |
Q |
| |
|
|||||||| |||||| ||||||| | ||| |||||||| || | ||||||||||||| |||||||||||||||||||||||||||| | ||| |||| |
|
|
| T |
15894017 |
aataaaggacatgtgaaaactattggtttcaataaactttgttatttatcactttcaagacttccaaagcttgtgagtatttgttcagaattactttggt |
15893918 |
T |
|
| Q |
103 |
tagaatgtccatccttgaagcaatttgatattgaggattgtcctatcttggagatgtatttcttaccaac |
172 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||| | |||||||||| |||||||| | |||||||||||| |
|
|
| T |
15893917 |
tagaatatccatccttgaagcaatttgatgttgtgcattgtcctatgttggagatctctttcttaccaac |
15893848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 256
Target Start/End: Complemental strand, 15893797 - 15893749
Alignment:
| Q |
208 |
caaaagatgttggttttcaaagtttccaagaaaacaactcaaggtcttc |
256 |
Q |
| |
|
||||||||||| ||||||| ||||| |||||||||| ||||||||||| |
|
|
| T |
15893797 |
caaaagatgttagttttcacagtttaaaagaaaacaattcaaggtcttc |
15893749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University