View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4173_low_14 (Length: 254)

Name: NF4173_low_14
Description: NF4173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4173_low_14
NF4173_low_14
[»] chr2 (18 HSPs)
chr2 (12-254)||(4445743-4445985)
chr2 (54-136)||(944802-944884)
chr2 (39-128)||(38935368-38935457)
chr2 (53-127)||(43398844-43398918)
chr2 (66-127)||(24037590-24037651)
chr2 (40-142)||(35311176-35311277)
chr2 (39-128)||(10459282-10459371)
chr2 (71-128)||(16564424-16564481)
chr2 (53-137)||(16180431-16180515)
chr2 (73-135)||(41099028-41099090)
chr2 (72-145)||(4224965-4225038)
chr2 (39-116)||(7932759-7932836)
chr2 (40-116)||(43465466-43465542)
chr2 (61-128)||(2949080-2949147)
chr2 (39-145)||(11386325-11386431)
chr2 (40-133)||(41374529-41374622)
chr2 (71-128)||(43042214-43042271)
chr2 (75-127)||(36597137-36597189)
[»] chr6 (9 HSPs)
chr6 (39-128)||(31323830-31323919)
chr6 (53-130)||(31522611-31522688)
chr6 (40-112)||(9829908-9829980)
chr6 (74-136)||(9675759-9675821)
chr6 (66-128)||(30531221-30531283)
chr6 (40-121)||(2282415-2282496)
chr6 (66-143)||(14222836-14222913)
chr6 (53-145)||(14446726-14446818)
chr6 (40-129)||(33822305-33822394)
[»] chr4 (8 HSPs)
chr4 (39-132)||(54235223-54235316)
chr4 (61-127)||(5496857-5496923)
chr4 (72-128)||(4423198-4423254)
chr4 (49-128)||(12276846-12276925)
chr4 (39-128)||(30848595-30848686)
chr4 (54-128)||(18995138-18995210)
chr4 (54-127)||(5024679-5024752)
chr4 (39-136)||(24980622-24980719)
[»] chr3 (8 HSPs)
chr3 (39-128)||(32221475-32221564)
chr3 (54-136)||(47783109-47783191)
chr3 (61-136)||(18364206-18364280)
chr3 (61-127)||(26104256-26104322)
chr3 (66-127)||(29637439-29637500)
chr3 (40-128)||(31280172-31280260)
chr3 (71-127)||(37330975-37331031)
chr3 (39-136)||(32221486-32221583)
[»] scaffold0097 (1 HSPs)
scaffold0097 (40-127)||(37928-38015)
[»] chr7 (5 HSPs)
chr7 (53-128)||(44816497-44816572)
chr7 (61-143)||(32652396-32652478)
chr7 (66-127)||(23971191-23971252)
chr7 (54-128)||(18731995-18732069)
chr7 (66-136)||(1554833-1554902)
[»] chr5 (11 HSPs)
chr5 (66-139)||(968276-968349)
chr5 (61-127)||(9530951-9531017)
chr5 (72-127)||(14646368-14646423)
chr5 (75-129)||(5727767-5727821)
chr5 (54-128)||(33669932-33670006)
chr5 (39-128)||(39030579-39030668)
chr5 (48-131)||(30293401-30293484)
chr5 (54-127)||(2424444-2424517)
chr5 (54-139)||(25467100-25467185)
chr5 (39-128)||(34252733-34252822)
chr5 (40-108)||(42324905-42324973)
[»] scaffold0067 (1 HSPs)
scaffold0067 (40-128)||(35957-36045)
[»] chr8 (4 HSPs)
chr8 (71-135)||(29797938-29798002)
chr8 (39-108)||(13209980-13210049)
chr8 (39-127)||(29110965-29111053)
chr8 (72-127)||(37627916-37627971)
[»] chr1 (7 HSPs)
chr1 (66-150)||(26265762-26265846)
chr1 (40-135)||(30693352-30693447)
chr1 (61-128)||(31784773-31784840)
chr1 (61-126)||(5693581-5693646)
chr1 (53-128)||(37918919-37918994)
chr1 (72-128)||(3693992-3694048)
chr1 (61-105)||(27527733-27527777)
[»] scaffold0027 (1 HSPs)
scaffold0027 (39-127)||(13190-13278)
[»] scaffold0034 (1 HSPs)
scaffold0034 (61-127)||(94984-95050)


Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 12 - 254
Target Start/End: Complemental strand, 4445985 - 4445743
Alignment:
Q  12 agagatcaaatatgtattccctccgtccaaaaattaatcagcaaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgactta 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||    
T  4445985 agagatcaaatatgtattccctccgtccaaaaattaatcagcaaaagtcaatacattttgttcaaaatttgtaccaaatacatcaatttatattaactta 4445886  T
Q  112 tttttgcttacattttgaaacggagagaatatatatgaaggaactcattcattattctagttgttgacaatgaaatcaatggtgggttggaaagccaaga 211  Q
    |||||||||| ||||||  | ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4445885 tttttgcttatattttgggatggaaagagtatatatgaaggaactcattcattattctagttgttgacaatgaaatcaatggtgggttggaaagccaaga 4445786  T
Q  212 agaggttgtggtatgccttctctgtaggatgaattgaatccca 254  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  4445785 agaggttgtggtatgccttctctgtaggatgaattgaatccca 4445743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 54 - 136
Target Start/End: Original strand, 944802 - 944884
Alignment:
Q  54 aaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttgaaacggag 136  Q
    |||||| |||| |||| ||||||||||||||||| ||||||||| |||| |||||| |||||| |||||||||||| ||||||    
T  944802 aaaagttaatgtatttagttcaaaatttgtaccaaatacatcaacttatgttgactaatttttacttacattttgagacggag 944884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 39 - 128
Target Start/End: Complemental strand, 38935457 - 38935368
Alignment:
Q  39 caaaaattaatcagcaaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttg 128  Q
    ||||||||| ||| ||||||| |||| |||||||||||||| |||| || ||||||||| |||| |||||| ||||||||||| ||||||    
T  38935457 caaaaattactcaacaaaagttaatgtattttgttcaaaatctgtatcaaatacatcaacttatgttgactcatttttgcttatattttg 38935368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 127
Target Start/End: Complemental strand, 43398918 - 43398844
Alignment:
Q  53 caaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacatttt 127  Q
    ||||||| |||| |||| ||||||||||||||||| ||||||||| ||||||||||  |||||| ||||||||||    
T  43398918 caaaagttaatgtatttggttcaaaatttgtaccaaatacatcaacttatattgacccatttttacttacatttt 43398844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 66 - 127
Target Start/End: Complemental strand, 24037651 - 24037590
Alignment:
Q  66 attttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacatttt 127  Q
    |||||||||||||||||||||| ||| ||||| |||| |||||| |||||||||||||||||    
T  24037651 attttgttcaaaatttgtaccaaatatatcaacttatgttgactcatttttgcttacatttt 24037590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 40 - 142
Target Start/End: Complemental strand, 35311277 - 35311176
Alignment:
Q  40 aaaaattaatcagcaaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttgaaacggagaga 139  Q
    |||| ||| ||| ||||||| |||| |||| ||||||||||||||| ||||| || || |||| |||||  ||||||||||||||||||||||| || ||    
T  35311277 aaaatttagtcaacaaaagttaatgtatttggttcaaaatttgtacaagatatat-aacttatgttgacccatttttgcttacattttgaaacgaaggga 35311179  T
Q  140 ata 142  Q
    |||    
T  35311178 ata 35311176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 128
Target Start/End: Original strand, 10459282 - 10459371
Alignment:
Q  39 caaaaattaatcagcaaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttg 128  Q
    ||||||||  ||| ||||||| |||| |||| |||||||||||||| ||||| |||||| |||| |||||  || |||||||||||||||    
T  10459282 caaaaattggtcaacaaaagttaatgtatttggttcaaaatttgtatcagatgcatcaacttatgttgaccaatctttgcttacattttg 10459371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 128
Target Start/End: Original strand, 16564424 - 16564481
Alignment:
Q  71 gttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttg 128  Q
    ||||||||||||||||| ||||||||| |||| |||||| |||||| |||||||||||    
T  16564424 gttcaaaatttgtaccaaatacatcaacttatgttgactcatttttacttacattttg 16564481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 53 - 137
Target Start/End: Complemental strand, 16180515 - 16180431
Alignment:
Q  53 caaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttgaaacggaga 137  Q
    ||||||| |||| |||| ||||||||||| ||    |||||||||||||| |||||| ||||||||||||||||||  |||||||    
T  16180515 caaaagttaatgtatttggttcaaaatttatatttaatacatcaatttatgttgactaatttttgcttacattttgggacggaga 16180431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 73 - 135
Target Start/End: Original strand, 41099028 - 41099090
Alignment:
Q  73 tcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttgaaacgga 135  Q
    ||||||||||||||| |||||| || |||| |||||  |||||||||||||||||| ||||||    
T  41099028 tcaaaatttgtaccaaatacattaacttatgttgacccatttttgcttacattttggaacgga 41099090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 145
Target Start/End: Complemental strand, 4225038 - 4224965
Alignment:
Q  72 ttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttgaaacggagagaatatat 145  Q
    |||||||||| |||||||||||||||||||| |||||  | |||| |||| |||||  |||||| |||||||||    
T  4225038 ttcaaaatttataccagatacatcaatttatgttgaccaacttttacttatattttagaacggaaagaatatat 4224965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 116
Target Start/End: Original strand, 7932759 - 7932836
Alignment:
Q  39 caaaaattaatcagcaaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttattttt 116  Q
    ||||||||| ||| ||||||| || | |||| ||||||||||| || |||||||||||| |||| |||||| ||||||    
T  7932759 caaaaattagtcaacaaaagttaacgtatttggttcaaaatttatatcagatacatcaacttatgttgactcattttt 7932836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 116
Target Start/End: Complemental strand, 43465542 - 43465466
Alignment:
Q  40 aaaaattaatcagcaaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttattttt 116  Q
    |||||||| | | ||||||| |||| |||||||||||||||| |  ||||||||||||| | ||||||| |||||||    
T  43465542 aaaaattagttaacaaaagttaatgtattttgttcaaaatttatgtcagatacatcaatatttattgacctattttt 43465466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 61 - 128
Target Start/End: Original strand, 2949080 - 2949147
Alignment:
Q  61 aatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttg 128  Q
    |||| |||||||||||||||  |  || |||||||||||||| ||||| ||||||| |||||||||||    
T  2949080 aatgtattttgttcaaaattaatgtcatatacatcaatttatgttgacctatttttacttacattttg 2949147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 145
Target Start/End: Original strand, 11386325 - 11386431
Alignment:
Q  39 caaaaattaatcagcaaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttgaaacggagag 138  Q
    |||||||| |||| ||||| | |||  ||||  ||||||||||||| || ||||||||| |||| ||||   | ||||||||| ||||||||||| ||||    
T  11386325 caaaaattgatcaacaaaaattaatatatttaattcaaaatttgtatcaaatacatcaacttatgttgatcaaattttgcttatattttgaaacgaagag 11386424  T
Q  139 aatatat 145  Q
    | |||||    
T  11386425 agtatat 11386431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 133
Target Start/End: Complemental strand, 41374622 - 41374529
Alignment:
Q  40 aaaaattaatcagcaaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttgaaacg 133  Q
    |||||||| ||| | ||||| |||| ||||  |||||| ||| ||||| ||||||||| || | || ||| |||||||||||||||||| ||||    
T  41374622 aaaaattagtcaacgaaagttaatgtatttgattcaaagtttataccaaatacatcaacttgtgttcactcatttttgcttacattttggaacg 41374529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 71 - 128
Target Start/End: Original strand, 43042214 - 43042271
Alignment:
Q  71 gttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttg 128  Q
    ||||||||||| || |||||||||||| || | || ||| ||||||||||||||||||    
T  43042214 gttcaaaatttatatcagatacatcaacttttgtttactcatttttgcttacattttg 43042271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 127
Target Start/End: Original strand, 36597137 - 36597189
Alignment:
Q  75 aaaatttgtaccagatacatcaatttatattgacttatttttgcttacatttt 127  Q
    |||||||||| ||||||||||||| ||||||||  |||||| ||||| |||||    
T  36597137 aaaatttgtaacagatacatcaatatatattgatctattttggcttatatttt 36597189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 39 - 128
Target Start/End: Original strand, 31323830 - 31323919
Alignment:
Q  39 caaaaattaatcagcaaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttg 128  Q
    ||||||||  ||| ||||||| |||| |||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||    
T  31323830 caaaaattggtcaacaaaagttaatgtattttgttcaaaatttgtaccagatacatcaacttatgttgacctatttttgcttacattttg 31323919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 53 - 130
Target Start/End: Complemental strand, 31522688 - 31522611
Alignment:
Q  53 caaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttgaa 130  Q
    ||||||| |||||||||  ||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||    
T  31522688 caaaagttaatgcatttgattcaaaatttgtaccagatacatcgttttatattaacttatttttgcttacattttgaa 31522611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 112
Target Start/End: Original strand, 9829908 - 9829980
Alignment:
Q  40 aaaaattaatcagcaaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttat 112  Q
    |||||||| ||| ||||| | |||| |||||||| ||||||||||||| |||||||||||||| |||||||||    
T  9829908 aaaaattagtcaacaaaaattaatgtattttgtttaaaatttgtaccaaatacatcaatttatgttgacttat 9829980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 74 - 136
Target Start/End: Complemental strand, 9675821 - 9675759
Alignment:
Q  74 caaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttgaaacggag 136  Q
    ||||||||||||||||| |||||| |||| |||||  ||||||||||||||||||| ||||||    
T  9675821 caaaatttgtaccagatgcatcaacttatgttgaccaatttttgcttacattttgagacggag 9675759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 128
Target Start/End: Original strand, 30531221 - 30531283
Alignment:
Q  66 attttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttg 128  Q
    |||| ||||||| ||||||||| ||||||||| |||| |||| | ||||||||||||||||||    
T  30531221 atttggttcaaagtttgtaccaaatacatcaacttatgttgagtcatttttgcttacattttg 30531283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 121
Target Start/End: Original strand, 2282415 - 2282496
Alignment:
Q  40 aaaaattaatcagcaaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgctta 121  Q
    |||||||  ||| ||||||| |||| |||| |||||||| ||||| || |||||||||||||| || ||| |||||||||||    
T  2282415 aaaaattggtcaacaaaagttaatgtatttagttcaaaaattgtatcaaatacatcaatttatgttaactaatttttgctta 2282496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 143
Target Start/End: Original strand, 14222836 - 14222913
Alignment:
Q  66 attttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttgaaacggagagaatat 143  Q
    ||||| ||||||||||  |||| ||||||||| |||| |||||  |||||||||||||||||| ||| |||| |||||    
T  14222836 attttattcaaaatttacaccatatacatcaacttatgttgacccatttttgcttacattttggaacagagacaatat 14222913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 145
Target Start/End: Original strand, 14446726 - 14446818
Alignment:
Q  53 caaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttgaaacggagagaatatat 145  Q
    ||||||| |||| || ||||||||||||| ||  ||||||||||| ||| ||||||  |||||| |||||||||||  |||||| || |||||    
T  14446726 caaaagttaatgtatgttgttcaaaatttatattagatacatcaacttacattgaccaatttttacttacattttgggacggagggagtatat 14446818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 129
Target Start/End: Original strand, 33822305 - 33822394
Alignment:
Q  40 aaaaattaatcagcaaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttga 129  Q
    ||||||| || | ||||||| |||  |||| |||||||||||||| || ||||||||| ||||||| |   |||||| ||||||||||||    
T  33822305 aaaaattgattaacaaaagttaatatatttagttcaaaatttgtatcaaatacatcaacttatattaatccatttttacttacattttga 33822394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 39 - 132
Target Start/End: Complemental strand, 54235316 - 54235223
Alignment:
Q  39 caaaaattaatcagcaaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttgaaac 132  Q
    ||||||||  ||| ||||||| |||| |||| ||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||    
T  54235316 caaaaattgctcaacaaaagttaatgtatttggttcaaaatttgtactaaatacatcaatttatattgactcatttttgcttacattttgaaac 54235223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 61 - 127
Target Start/End: Complemental strand, 5496923 - 5496857
Alignment:
Q  61 aatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacatttt 127  Q
    |||| |||| ||||||||||||||||| ||| ||||| ||||||||||| ||||||| |||||||||    
T  5496923 aatgtatttggttcaaaatttgtaccaaataaatcaacttatattgactcatttttgtttacatttt 5496857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 72 - 128
Target Start/End: Original strand, 4423198 - 4423254
Alignment:
Q  72 ttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttg 128  Q
    |||||||||||||||| ||||||||| |||||||||   ||||||||||||||||||    
T  4423198 ttcaaaatttgtaccaaatacatcaacttatattgatccatttttgcttacattttg 4423254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 128
Target Start/End: Original strand, 12276846 - 12276925
Alignment:
Q  49 tcagcaaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttg 128  Q
    ||||||||||| |||| ||||  |||||||||| ||| | ||||||||| |||| ||||| |||||||||||| ||||||    
T  12276846 tcagcaaaagttaatgtatttgattcaaaatttatactaaatacatcaacttatgttgacctatttttgcttatattttg 12276925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 128
Target Start/End: Complemental strand, 30848686 - 30848595
Alignment:
Q  39 caaaaattaatcagcaaaagtcaatgcattttgttcaaaatttgtac--cagatacatcaatttatattgacttatttttgcttacattttg 128  Q
    ||||||||  ||| ||||| | |||| ||||||||||||||||||||   ||||||||||| |||| ||||   ||||||||||||||||||    
T  30848686 caaaaattggtcaacaaaaattaatgtattttgttcaaaatttgtacattagatacatcaacttatgttgatccatttttgcttacattttg 30848595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 128
Target Start/End: Complemental strand, 18995210 - 18995138
Alignment:
Q  54 aaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttg 128  Q
    |||||| |||| |||| |||||||||||||| |||||||||||| |||| ||||||  |||||||||| ||||||    
T  18995210 aaaagttaatgtatttggttcaaaatttgta-cagatacatcaacttat-ttgactactttttgcttatattttg 18995138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 127
Target Start/End: Original strand, 5024679 - 5024752
Alignment:
Q  54 aaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacatttt 127  Q
    |||||| |||| ||||  |||||||||| || || ||||| ||||||||||||||| ||||||  |||||||||    
T  5024679 aaaagttaatgtatttatttcaaaatttatatcaaatacaacaatttatattgactcatttttaattacatttt 5024752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 136
Target Start/End: Complemental strand, 24980719 - 24980622
Alignment:
Q  39 caaaaattaatcagcaaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttgaaacggag 136  Q
    ||||||||  ||| ||||| | |||| ||||||| ||||||||||  |||||||||||| |||| ||||   |||||| ||||||||||  |||||||    
T  24980719 caaaaatttgtcaacaaaaattaatgtattttgtacaaaatttgtgtcagatacatcaacttatgttgatccatttttacttacattttagaacggag 24980622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 39 - 128
Target Start/End: Complemental strand, 32221564 - 32221475
Alignment:
Q  39 caaaaattaatcagcaaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttg 128  Q
    ||||||||| ||| ||||||| |||| |||| ||||||||||||||||| ||||||||||||||  |||   ||||||||||||||||||    
T  32221564 caaaaattagtcaacaaaagttaatgtatttggttcaaaatttgtaccaaatacatcaatttatgctgatcaatttttgcttacattttg 32221475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 136
Target Start/End: Original strand, 47783109 - 47783191
Alignment:
Q  54 aaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttgaaacggag 136  Q
    |||||| |||| |||| |||||||||||||| ||||||||||   |||| |||||| ||||||||||| |||||| |||||||    
T  47783109 aaaagttaatgtatttggttcaaaatttgtatcagatacatcggcttatgttgactcatttttgcttatattttggaacggag 47783191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 136
Target Start/End: Original strand, 18364206 - 18364280
Alignment:
Q  61 aatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttgaaacggag 136  Q
    |||| ||||||||||||||||||  |||||||||||| |||| || ||  |||||||||||||||||| |||||||    
T  18364206 aatgtattttgttcaaaatttgtgtcagatacatcaacttatgttaac-catttttgcttacattttggaacggag 18364280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 61 - 127
Target Start/End: Original strand, 26104256 - 26104322
Alignment:
Q  61 aatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacatttt 127  Q
    |||| |||| |||||||||||||| || | | |||||||||| |||||| |||||||||||||||||    
T  26104256 aatgtatttagttcaaaatttgtatcaaacaaatcaatttatgttgactcatttttgcttacatttt 26104322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 127
Target Start/End: Complemental strand, 29637500 - 29637439
Alignment:
Q  66 attttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacatttt 127  Q
    |||| |||||||||||||| || ||| || ||||||| ||||||||||||| ||||||||||    
T  29637500 atttggttcaaaatttgtatcaaatatattaatttatgttgacttattttttcttacatttt 29637439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 128
Target Start/End: Original strand, 31280172 - 31280260
Alignment:
Q  40 aaaaattaatcagcaaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttg 128  Q
    ||||||| |||| ||||| | |||| |||| ||||||||||||||||| |||||| ||||||| ||||   |||||| ||||| |||||    
T  31280172 aaaaattgatcaacaaaatttaatgtatttggttcaaaatttgtaccatatacattaatttatgttgatccatttttccttaccttttg 31280260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 127
Target Start/End: Original strand, 37330975 - 37331031
Alignment:
Q  71 gttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacatttt 127  Q
    ||||||||||||||| |||||| ||||||||| || ||  |||||||||||||||||    
T  37330975 gttcaaaatttgtactagatacgtcaatttatgttaacccatttttgcttacatttt 37331031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 136
Target Start/End: Original strand, 32221486 - 32221583
Alignment:
Q  39 caaaaattaatcagcaaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttgaaacggag 136  Q
    |||||||| ||||||| || |  ||| |||| || |||| |||| |||| |||||| || || | |||||| ||||||||||||||||||| ||||||    
T  32221486 caaaaattgatcagcataaattgatgtatttggtacaaattttgaaccaaatacattaacttttgttgactaatttttgcttacattttgatacggag 32221583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 40 - 127
Target Start/End: Original strand, 37928 - 38015
Alignment:
Q  40 aaaaattaatcagcaaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacatttt 127  Q
    |||||||| ||| ||||||| |||| |||| ||| ||||||| ||||| |||||||||||||||||||||  |||||| |||||||||    
T  37928 aaaaattagtcaacaaaagttaatgtatttggtttaaaatttataccaaatacatcaatttatattgactcgtttttgtttacatttt 38015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 53 - 128
Target Start/End: Original strand, 44816497 - 44816572
Alignment:
Q  53 caaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttg 128  Q
    ||||||| |||| |||| ||||||||||||||||| |||||||| |||||||| | | ||||||||||||||||||    
T  44816497 caaaagttaatgtatttggttcaaaatttgtaccaaatacatcagtttatattaattcatttttgcttacattttg 44816572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 61 - 143
Target Start/End: Complemental strand, 32652478 - 32652396
Alignment:
Q  61 aatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttgaaacggagagaatat 143  Q
    |||| |||| ||||||| ||||||||| ||||| |||||||| ||||||||||||| |||||||||||| ||| ||| |||||    
T  32652478 aatgtatttggttcaaagtttgtaccaaatacaccaatttatgttgacttatttttacttacattttgagacgcagaaaatat 32652396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 66 - 127
Target Start/End: Complemental strand, 23971252 - 23971191
Alignment:
Q  66 attttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacatttt 127  Q
    |||| ||||||||||||||||| ||||||||| ||||||||| ||||||||||||| |||||    
T  23971252 atttagttcaaaatttgtaccaaatacatcaacttatattgatttatttttgcttatatttt 23971191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 128
Target Start/End: Complemental strand, 18732069 - 18731995
Alignment:
Q  54 aaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttg 128  Q
    |||||| |||| |||| ||||||||||| |||||||||||||||||||| ||||   ||||||||||| ||||||    
T  18732069 aaaagttaatgtatttggttcaaaatttataccagatacatcaatttatgttgatccatttttgcttatattttg 18731995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 136
Target Start/End: Complemental strand, 1554902 - 1554833
Alignment:
Q  66 attttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttgaaacggag 136  Q
    |||||||| ||||||||||| ||||| |||||   ||||||| ||||||||||||||||||||| ||||||    
T  1554902 attttgtttaaaatttgtactagatatatcaaaa-atattgatttatttttgcttacattttgagacggag 1554833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 66 - 139
Target Start/End: Complemental strand, 968349 - 968276
Alignment:
Q  66 attttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttgaaacggagaga 139  Q
    |||| ||||||||||||||||| ||||||||| ||| ||||||  | |||| ||||||||||||||||||||||    
T  968349 atttagttcaaaatttgtaccaaatacatcaacttaaattgacccacttttacttacattttgaaacggagaga 968276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 61 - 127
Target Start/End: Original strand, 9530951 - 9531017
Alignment:
Q  61 aatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacatttt 127  Q
    |||| |||| ||||||||||| || || ||||| ||||||||||||||| |||||||||||||||||    
T  9530951 aatgtatttggttcaaaatttatatcaaatacaccaatttatattgactcatttttgcttacatttt 9531017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 127
Target Start/End: Complemental strand, 14646423 - 14646368
Alignment:
Q  72 ttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacatttt 127  Q
    |||||||||||||| | |||||| ||||||||||||||||||||| |||| |||||    
T  14646423 ttcaaaatttgtactaaatacattaatttatattgacttatttttacttatatttt 14646368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 75 - 129
Target Start/End: Original strand, 5727767 - 5727821
Alignment:
Q  75 aaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttga 129  Q
    ||||||||||||||||||||||| ||||  |||| ||||||| ||||||||||||    
T  5727767 aaaatttgtaccagatacatcaacttattgtgacctatttttacttacattttga 5727821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 128
Target Start/End: Complemental strand, 33670006 - 33669932
Alignment:
Q  54 aaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttg 128  Q
    |||||| |||| |||| ||| |||||||||||||||||||  || |||| |||||  ||||||||||||||||||    
T  33670006 aaaagttaatgtatttggtttaaaatttgtaccagatacactaacttatgttgacccatttttgcttacattttg 33669932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 128
Target Start/End: Original strand, 39030579 - 39030668
Alignment:
Q  39 caaaaattaatcagcaaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttg 128  Q
    ||||||||  ||| ||||||| |||| |||| ||| ||||||||||||| |||||| || || | |||||| ||||||||||| ||||||    
T  39030579 caaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaacttttgttgactaatttttgcttatattttg 39030668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 131
Target Start/End: Original strand, 30293401 - 30293484
Alignment:
Q  48 atcagcaaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttgaaa 131  Q
    |||| |||||||||||| ||||  |||||||||| || || |||||||||  ||| |||||| |||||| |||| |||||||||    
T  30293401 atcaacaaaagtcaatgtatttgattcaaaatttatatcaaatacatcaacatatgttgactcatttttacttatattttgaaa 30293484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 127
Target Start/End: Complemental strand, 2424517 - 2424444
Alignment:
Q  54 aaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacatttt 127  Q
    |||||| |||| |||| ||||||||||||||||| ||||||||  |||| || ||  ||||||||||| |||||    
T  2424517 aaaagttaatgtatttggttcaaaatttgtaccatatacatcagcttatgttaacaaatttttgcttatatttt 2424444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 139
Target Start/End: Complemental strand, 25467185 - 25467100
Alignment:
Q  54 aaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttgaaacggagaga 139  Q
    |||||| |||| || | ||||||||||| || | |||||||||| |||| || |   ||||||||||||||||||| |||||||||    
T  25467185 aaaagttaatgtatgtggttcaaaatttatatcggatacatcaacttatgttaatccatttttgcttacattttgagacggagaga 25467100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 128
Target Start/End: Original strand, 34252733 - 34252822
Alignment:
Q  39 caaaaattaatcagcaaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttg 128  Q
    ||||||||  ||| ||||||| |||| |||| ||||||||||| | ||| || |||||| |||| || ||  ||||||||||||||||||    
T  34252733 caaaaattggtcaacaaaagttaatgtatttggttcaaaatttatgccacattcatcaacttatgttaacccatttttgcttacattttg 34252822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 108
Target Start/End: Complemental strand, 42324973 - 42324905
Alignment:
Q  40 aaaaattaatcagcaaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgac 108  Q
    |||||||  ||| ||||||| |||| ||||  || ||||||| ||||| ||||||||||||||||||||    
T  42324973 aaaaattggtcaacaaaagttaatgtatttgttttaaaatttataccaaatacatcaatttatattgac 42324905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 128
Target Start/End: Original strand, 35957 - 36045
Alignment:
Q  40 aaaaattaatcagcaaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttg 128  Q
    ||||||| |||| |||  || |||| |||| || ||||||||||| || ||||||||||||||||||||| ||||||| ||||||||||    
T  35957 aaaaattgatcaacaaccgttaatgtatttggtacaaaatttgtatcaaatacatcaatttatattgactcatttttgtttacattttg 36045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 135
Target Start/End: Complemental strand, 29798002 - 29797938
Alignment:
Q  71 gttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttgaaacgga 135  Q
    ||||||||||||||||| |||||| ||||||| || ||| |||||||||||||||||| ||||||    
T  29798002 gttcaaaatttgtaccaaatacataaatttatgttaactcatttttgcttacattttggaacgga 29797938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 108
Target Start/End: Original strand, 13209980 - 13210049
Alignment:
Q  39 caaaaattaatcagcaaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgac 108  Q
    |||||||| |||| ||||||| |||| |||| |||||||||||||| |||||||||||| |||| |||||    
T  13209980 caaaaattgatcaacaaaagttaatgtatttggttcaaaatttgtatcagatacatcaacttatgttgac 13210049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 39 - 127
Target Start/End: Complemental strand, 29111053 - 29110965
Alignment:
Q  39 caaaaattaatcagcaaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacatttt 127  Q
    |||||||| |||| | ||| | |||| |||| ||||||||||| ||||| ||||||  |||||||||||| |||| |||||||||||||    
T  29111053 caaaaattgatcaacgaaacttaatgtatttggttcaaaatttataccaaatacattcatttatattgacctattattgcttacatttt 29110965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 127
Target Start/End: Complemental strand, 37627971 - 37627916
Alignment:
Q  72 ttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacatttt 127  Q
    ||||||||||||| || ||||||||| ||||||| |||||||||| ||||||||||    
T  37627971 ttcaaaatttgtatcaaatacatcaacttatattaacttatttttacttacatttt 37627916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 150
Target Start/End: Complemental strand, 26265846 - 26265762
Alignment:
Q  66 attttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttgaaacggagagaatatatatgaa 150  Q
    |||| ||||||||||| ||| | ||||||||| |||| || || ||||||||||||||||||| || ||||| ||||||||||||    
T  26265846 atttggttcaaaatttatactaaatacatcaacttatgttaacatatttttgcttacattttggaatggagaaaatatatatgaa 26265762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 40 - 135
Target Start/End: Original strand, 30693352 - 30693447
Alignment:
Q  40 aaaaattaatcagcaaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttgaaacgga 135  Q
    ||||||| |||| ||||| | |||| ||||  |||||||||||||||| ||||||||  |||| |||| | |||||| ||||||||||||||||||    
T  30693352 aaaaattgatcaacaaaaattaatgtatttgattcaaaatttgtaccaaatacatcatattatgttgattcatttttacttacattttgaaacgga 30693447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 61 - 128
Target Start/End: Original strand, 31784773 - 31784840
Alignment:
Q  61 aatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttg 128  Q
    |||| |||||||||||||||||||  ||||||||||| |||| |||||  ||||||||||||||||||    
T  31784773 aatgtattttgttcaaaatttgtattagatacatcaacttatgttgacaaatttttgcttacattttg 31784840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 126
Target Start/End: Complemental strand, 5693646 - 5693581
Alignment:
Q  61 aatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattt 126  Q
    ||||||||| ||| ||||||||||| | | |||||||||||| ||||  |||||||||||||||||    
T  5693646 aatgcatttggtttaaaatttgtactaaaaacatcaatttatgttgatatatttttgcttacattt 5693581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 128
Target Start/End: Complemental strand, 37918994 - 37918919
Alignment:
Q  53 caaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttg 128  Q
    ||||||| |||| |||| ||| ||||||| || || ||||||||| |||| |||| | ||||||||||||||||||    
T  37918994 caaaagtgaatgtatttggtttaaaatttatatcaaatacatcaacttatgttgattcatttttgcttacattttg 37918919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 128
Target Start/End: Complemental strand, 3694048 - 3693992
Alignment:
Q  72 ttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttg 128  Q
    |||||||||||||  | |||||||||||||| |||||| |||| | |||||||||||    
T  3694048 ttcaaaatttgtattaaatacatcaatttatgttgactcatttctacttacattttg 3693992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 105
Target Start/End: Complemental strand, 27527777 - 27527733
Alignment:
Q  61 aatgcattttgttcaaaatttgtaccagatacatcaatttatatt 105  Q
    |||| |||| ||||||||||| ||||||||||||||| |||||||    
T  27527777 aatgtatttggttcaaaatttataccagatacatcaacttatatt 27527733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 39 - 127
Target Start/End: Original strand, 13190 - 13278
Alignment:
Q  39 caaaaattaatcagcaaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacatttt 127  Q
    |||||||  |||| ||||||| |||| |||| ||| ||||||||||| ||||||||||| ||||||| |||  ||||| ||||||||||    
T  13190 caaaaatggatcaacaaaagttaatgtatttggtttaaaatttgtacaagatacatcaacttatattaactcgtttttacttacatttt 13278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 127
Target Start/End: Original strand, 94984 - 95050
Alignment:
Q  61 aatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacatttt 127  Q
    |||| ||| |||||||||||||||||| ||||||||| |||| |||||  ||||||  |||||||||    
T  94984 aatgtattatgttcaaaatttgtaccaaatacatcaacttatgttgaccaattttttattacatttt 95050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University