View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4173_low_2 (Length: 470)
Name: NF4173_low_2
Description: NF4173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4173_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 18 - 462
Target Start/End: Complemental strand, 26223815 - 26223372
Alignment:
| Q |
18 |
acatgatacaataaagcctacaaaaagaaggataaaagcaaataaaaggaaactagcaaacataagcttttcaaaatattattctagccaataacaacga |
117 |
Q |
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|||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||| |||| ||| ||| |
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| T |
26223815 |
acatgacacaataaagcctacaaaaagaaggataaa-gcaaataaaaggaaaatagcaaacataagcatttcaaaatattattctaggcaattacagcga |
26223717 |
T |
|
| Q |
118 |
aataacaacaatttcattttttatatgctttggaaattccactcttggcgcgggtgtgaatgtgaaggtgtgggtcaggattctagttgtgaagactttt |
217 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
26223716 |
gataacaacaatttcattttttataggctttggaaattccactcttggcgcgggtgtgaatgtgaaggtgtgggtctggattctagttgtgaagactttt |
26223617 |
T |
|
| Q |
218 |
ccactcaatagagttgtgagctgttgagtgacaaattaattatgtggtgctaggtaggtatataggtaggtagtttctcaaatggtnnnnnnnnnggggt |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
26223616 |
ccactcaatagagttgtgagctgttgagtgacaaattaattatgtggtgctaggtaggtatataggtaggtagtttctcaaatggaaaaaaaaaaagggt |
26223517 |
T |
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| Q |
318 |
gtagtttacatgtaatactaaatatgtatattagatttatgaaccatttgaaaattaatttaggcctatattatatgatgatcaatgatcaaacttcgta |
417 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||| ||||| |||||| ||| |
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| T |
26223516 |
gtagtttccatgtaatactaaatatgtatattagatttatgaaccatttgaaagttaatttaggcctatattatctgaggatcgatgattaaactttgta |
26223417 |
T |
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| Q |
418 |
cttgtgacatgtttgtattgacttttcacgcttatcttctgtgtt |
462 |
Q |
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| T |
26223416 |
cttttgatatgtttgaattgacttttcacgcttatattctgtgtt |
26223372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 206 - 300
Target Start/End: Complemental strand, 26251598 - 26251507
Alignment:
| Q |
206 |
gtgaagacttttccactcaatagagttgtgagct-gttgagtgacaaattaattatgtggtgctaggtaggtatataggtaggtagtttctcaaat |
300 |
Q |
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| T |
26251598 |
gtgaagactttttctgtcaatagagttatgagtttgttgagtgacaaactaattatgtggtgctaggaagg----taggtaggcagtttctcaaat |
26251507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 302
Target Start/End: Complemental strand, 26257635 - 26257515
Alignment:
| Q |
180 |
tgaaggtgtgggtcaggattctagttgtgaagacttttccactcaatagagttgtgagctgttgagtgacaaattaattatgtggtgctaggtaggtata |
279 |
Q |
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||||||||||| || | || || || ||||||| |||||| || |||| || |||| |||||||||| ||||| |||||||| | |||| |||| || |
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| T |
26257635 |
tgaaggtgtggttctgcatcctggtagtgaagagttttcctttccttagaattatgagttgttgagtgaaaaatttattatgtgcttctagatagg--ta |
26257538 |
T |
|
| Q |
280 |
taggtaggtagtttctcaaatgg |
302 |
Q |
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|||||| |||||||||||||||| |
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| T |
26257537 |
taggtacgtagtttctcaaatgg |
26257515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 18 - 179
Target Start/End: Complemental strand, 15340662 - 15340502
Alignment:
| Q |
18 |
acatgatacaataaagcctacaaaaagaaggataaaagcaaataaaaggaaactagcaaacataagcttttcaaaatattattctagccaataacaacga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||| |
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| T |
15340662 |
acatgatacaataaagcctacaaaaagaaggataaa-gcaaataaaaggaaactagcaaacagaagcatttcaaaatattattctagccaataacagcga |
15340564 |
T |
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| Q |
118 |
aataacaacaatttcattttttatatgctttggaaattccactcttggcgcgggtgtgaatg |
179 |
Q |
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| T |
15340563 |
aacaacaacaatttcattttttataggctttggaaattccactcttggcgcgggtgtgaatg |
15340502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 30646577 - 30646483
Alignment:
| Q |
18 |
acatgatacaataaagcctacaaaaagaaggataaaagcaaataaaaggaaactagcaaacataagcttttcaaaatattattctagccaataaca |
113 |
Q |
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||||||| ||||||||||||||||| |||||||||| ||||| || || |||||||| |||| |||||| |||||||||||||||||||||||||| |
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| T |
30646577 |
acatgatccaataaagcctacaaaatgaaggataaa-gcaaagaacagcaaactagccaacaaaagcttatcaaaatattattctagccaataaca |
30646483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 121 - 179
Target Start/End: Complemental strand, 45348629 - 45348571
Alignment:
| Q |
121 |
aacaacaatttcattttttatatgctttggaaattccactcttggcgcgggtgtgaatg |
179 |
Q |
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|||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
45348629 |
aacagcaatttcattttttataggctttggaaattccactcttggcacgggtgtgaatg |
45348571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 121 - 179
Target Start/End: Complemental strand, 45358108 - 45358050
Alignment:
| Q |
121 |
aacaacaatttcattttttatatgctttggaaattccactcttggcgcgggtgtgaatg |
179 |
Q |
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|||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
45358108 |
aacagcaatttcattttttataggctttggaaattccactcttggcacgggtgtgaatg |
45358050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 121 - 179
Target Start/End: Original strand, 45119382 - 45119440
Alignment:
| Q |
121 |
aacaacaatttcattttttatatgctttggaaattccactcttggcgcgggtgtgaatg |
179 |
Q |
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|||| ||||||||||||||||| |||||||||||||||||||| || |||||||||||| |
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| T |
45119382 |
aacagcaatttcattttttataggctttggaaattccactcttagcacgggtgtgaatg |
45119440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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