View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4173_low_20 (Length: 218)
Name: NF4173_low_20
Description: NF4173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4173_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 145; Significance: 2e-76; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 19 - 209
Target Start/End: Original strand, 2357631 - 2357814
Alignment:
| Q |
19 |
acttgggcaatatgtttgttattgaaaaatcctcatacattggaaaaagcaaaagcagaacttgacttccacgttggaagagataaatgtgtaacaaagt |
118 |
Q |
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| T |
2357631 |
acttgggcaatatgtttgttactgaaaaatcctcatacattggaaaaagcaaaagcagaacttgacttccacgttggaagagataaatgtgtaacaaagt |
2357730 |
T |
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| Q |
119 |
cggatataaataagttggtgtaccttcaagtgataatcaaagaaaccctaatggctaagattatatccagctggtcctctctctgctcctc |
209 |
Q |
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| T |
2357731 |
cggatataaacaagttggtgtaccttcaagcgataatcaaagaaacc-------ctaagattatatccagttggtcctctctctgcacctc |
2357814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 22 - 169
Target Start/End: Original strand, 2362949 - 2363096
Alignment:
| Q |
22 |
tgggcaatatgtttgttattgaaaaatcctcatacattggaaaaagcaaaagcagaacttgacttccacgttggaagagataaatgtgtaacaaagtcgg |
121 |
Q |
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| T |
2362949 |
tgggcaatatgtttgttgcttagaaatcctctaatattgaaaaaagcaaaagaagaacttgatgctcaagttggaaaagagaggtgtgtaagaaagtcag |
2363048 |
T |
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| Q |
122 |
atataaataagttggtgtaccttcaagtgataatcaaagaaaccctaa |
169 |
Q |
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| T |
2363049 |
atatagacaagttggtgtaccttcaagccatagtcaaagaaacactaa |
2363096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 169
Target Start/End: Original strand, 2351318 - 2351465
Alignment:
| Q |
22 |
tgggcaatatgtttgttattgaaaaatcctcatacattggaaaaagcaaaagcagaacttgacttccacgttggaagagataaatgtgtaacaaagtcgg |
121 |
Q |
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| T |
2351318 |
tgggcaatatgtttactattgaaaaatcctcttgtattgaaaaaagcaaaagaagaacttgacactcacgttggcaaagaaaggcttgtaaacgagtcgg |
2351417 |
T |
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| Q |
122 |
atataaataagttggtgtaccttcaagtgataatcaaagaaaccctaa |
169 |
Q |
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|||| ||||||||| |||||||||| ||| | ||||||||||||| |
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| T |
2351418 |
atattggtaagttggtataccttcaagctatagtaaaagaaaccctaa |
2351465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 169
Target Start/End: Original strand, 2368695 - 2368842
Alignment:
| Q |
22 |
tgggcaatatgtttgttattgaaaaatcctcatacattggaaaaagcaaaagcagaacttgacttccacgttggaagagataaatgtgtaacaaagtcgg |
121 |
Q |
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|||||||||||||||||| | | |||||||| | ||||||||||||||||| ||||||||| || ||||||| ||| | ||||||| | || | | |
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| T |
2368695 |
tgggcaatatgtttgttacttagaaatcctctaatattggaaaaagcaaaagaagaacttgatactcaagttggaaaagagaggtgtgtaagagagacag |
2368794 |
T |
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| Q |
122 |
atataaataagttggtgtaccttcaagtgataatcaaagaaaccctaa |
169 |
Q |
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| ||| | ||||||||||| ||||||| || ||||||||||||||| |
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| T |
2368795 |
acatagacaagttggtgtatcttcaagccattgtcaaagaaaccctaa |
2368842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 22 - 169
Target Start/End: Original strand, 4305647 - 4305794
Alignment:
| Q |
22 |
tgggcaatatgtttgttattgaaaaatcctcatacattggaaaaagcaaaagcagaacttgacttccacgttggaagagataaatgtgtaacaaagtcgg |
121 |
Q |
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|||||||| ||||||||| || ||||||||| | | | ||||||||| ||| |||||||||| |||| ||||| | ||| | ||||||| | |||||| |
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| T |
4305647 |
tgggcaatgtgtttgttactggaaaatcctcttgtaatagaaaaagcacaagaagaacttgacatccaagttggcaaagagaggtgtgtaaaagagtcgg |
4305746 |
T |
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| Q |
122 |
atataaataagttggtgtaccttcaagtgataatcaaagaaaccctaa |
169 |
Q |
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||||| | |||||||| |||||||||| |||| ||||||||||||||| |
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| T |
4305747 |
atatagacaagttggtataccttcaagcgatagtcaaagaaaccctaa |
4305794 |
T |
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