View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4173_low_3 (Length: 402)
Name: NF4173_low_3
Description: NF4173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4173_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 384; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Complemental strand, 36876724 - 36876333
Alignment:
| Q |
1 |
ttgttctcaaaaacaccactatatcgtcaaccttgacctctctcacatgttccaacattggctctctataccatactgacatatccttcattgctcattc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36876724 |
ttgttctcaaaaacaccactatatcgtcaaccttgacctctctcacatgttccaacattggctctctataccatactgacatatccttcattgctcattc |
36876625 |
T |
|
| Q |
101 |
ttttcctttcctccaacaactggatatcagtttccccaaaacaataaccggtaatggctacgacactgacacttataataatgctctaaagcttcttact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36876624 |
ttttcctttcctccaacaactggatatcagtttccccaaaacaataaccggtaatggctacgacactgacacttataataatgctctaaagcttcttact |
36876525 |
T |
|
| Q |
201 |
caaaggctttcaaaacttcgcaaggttaatttctctggtaatttctacattaatgactcgttgttttatgaactgtgagctttccacgtgctggttagtg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
36876524 |
caaaggctttcaaaacttcgcaaggttaatttctctggtaatttctacattaatgactcgttgttttatgaactgtgatctttccacgtgctggttagtg |
36876425 |
T |
|
| Q |
301 |
agcttttagaaggttaatttctactttaatctctctggtggttatgtttgattgtcctttcctaaaacgctggtatttgaaatctttctctg |
392 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
36876424 |
agcttttagaaggttaatttctactttaatctctctggtggttatgtttgattgtcctttcctaacacgctggtatttgaaatctttctctg |
36876333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 27 - 259
Target Start/End: Complemental strand, 33397612 - 33397389
Alignment:
| Q |
27 |
tcaaccttgacctctctcacatgttccaacattggctctctataccatactgacatatccttcattgctcattcttttcctttcctccaacaactggata |
126 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||| |||||| |
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| T |
33397612 |
tcaaccttgacctctctcacttgttccaacatcggctctctataccatactgacatatccttcattgccgattccttccctttcctccaacaattggata |
33397513 |
T |
|
| Q |
127 |
tcagtttccccaaaacaataaccggtaatggctacgacactgacacttataataatgctctaaagcttcttactcaaaggctttcaaaacttcgcaaggt |
226 |
Q |
| |
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|||||| ||| |||| ||| ||| ||| |||| ||||| ||||||||||||| | |||||||| ||||||| |||||||||||| |||||||| |
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| T |
33397512 |
tcagttaccctaaaataatcacc---aat------gacagtgacaattataataatgctttgaagcttctcactcaaaagctttcaaaactccgcaaggt |
33397422 |
T |
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| Q |
227 |
taatttctctggtaatttctacattaatgactc |
259 |
Q |
| |
|
|||| |||||||| |||||||| |||||||||| |
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| T |
33397421 |
taatctctctggtcatttctacgttaatgactc |
33397389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 30 - 267
Target Start/End: Original strand, 27004755 - 27004983
Alignment:
| Q |
30 |
accttgacctctctcacatgttccaacattggctctctataccatactgacatatccttcattgctcattcttttcctttcctccaacaactggatatca |
129 |
Q |
| |
|
|||||||||||||||||||||||||| || | ||||||| ||| ||| |||||||||| || || |||| || || |||||||||||| ||||||||| |
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| T |
27004755 |
accttgacctctctcacatgttccaatatggcttctctatgccacactcacatatccttgatcgcagattcattccccttcctccaacaattggatatca |
27004854 |
T |
|
| Q |
130 |
gtttccccaaaacaataaccggtaatggctacgacactgacacttataataatgctctaaagcttcttactcaaaggctttcaaaacttcgcaaggttaa |
229 |
Q |
| |
|
||||||| ||||||||| | ||||||| || | ||||| | ||||||||| ||||||||||||||| |||||||||||| ||||| ||||| |
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| T |
27004855 |
gtttccctaaaacaatatctggtaatg---------ctcatgcttattacaatgctctacagcttcttactcaaaagctttcaaaactccgcaatgttaa |
27004945 |
T |
|
| Q |
230 |
tttctctggtaatttctacattaatgactcgttgtttt |
267 |
Q |
| |
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| |||||||| ||| |||| |||||||||| ||||||| |
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| T |
27004946 |
tctctctggtcattcctactttaatgactctttgtttt |
27004983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 37579791 - 37579839
Alignment:
| Q |
4 |
ttctcaaaaacaccactatatcgtcaaccttgacctctctcacatgttc |
52 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| || ||||| |
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| T |
37579791 |
ttctcaaaaacaccactatatcatcaaccttgacctctctgacttgttc |
37579839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 180 - 247
Target Start/End: Original strand, 33093052 - 33093119
Alignment:
| Q |
180 |
aatgctctaaagcttcttactcaaaggctttcaaaacttcgcaaggttaatttctctggtaatttcta |
247 |
Q |
| |
|
|||||| ||||| ||||| |||||| ||||| |||||| |||||||||||| |||| ||||||||||| |
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| T |
33093052 |
aatgctttaaaggttcttgctcaaaagcttttaaaactccgcaaggttaatctctcaggtaatttcta |
33093119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 230
Target Start/End: Original strand, 37579955 - 37580005
Alignment:
| Q |
180 |
aatgctctaaagcttcttactcaaaggctttcaaaacttcgcaaggttaat |
230 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||| ||||||||||| |
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| T |
37579955 |
aatgctctaaaggttcttactcaaaagctttcaaaactctgcaaggttaat |
37580005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 204 - 267
Target Start/End: Original strand, 33708171 - 33708234
Alignment:
| Q |
204 |
aggctttcaaaacttcgcaaggttaatttctctggtaatttctacattaatgactcgttgtttt |
267 |
Q |
| |
|
|||||||||||||| || ||||||||| |||| ||||||| |||| | |||||||| ||||||| |
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| T |
33708171 |
aggctttcaaaactccgtaaggttaatctctccggtaattcctacgtaaatgactcattgtttt |
33708234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 205 - 267
Target Start/End: Original strand, 33714038 - 33714100
Alignment:
| Q |
205 |
ggctttcaaaacttcgcaaggttaatttctctggtaatttctacattaatgactcgttgtttt |
267 |
Q |
| |
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|||||||| |||| || ||||||||| |||||||||||| ||| | |||||||||||||||| |
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| T |
33714038 |
ggctttcagaactccgtaaggttaatctctctggtaattcctatgtaaatgactcgttgtttt |
33714100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 187 - 277
Target Start/End: Original strand, 18723544 - 18723634
Alignment:
| Q |
187 |
taaagcttcttactcaaaggctttcaaaacttcgcaaggttaatttctctggtaatttctacattaatgactcgttgttttatgaactgtg |
277 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||||| |||||| | ||||||||| ||||||||||||| || ||||||| | ||||||| |
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| T |
18723544 |
taaaggttcttactcaaaggctttcaaaactccgcaaagttaatctttctggtaatatctacattaatgattcattgttttttcaactgtg |
18723634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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