View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4174_high_1 (Length: 585)
Name: NF4174_high_1
Description: NF4174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4174_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 493; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 1 - 574
Target Start/End: Original strand, 39521573 - 39522146
Alignment:
| Q |
1 |
gtttgaggtgtgaaagtgattgtgaatctttttctgatgattttaacgtaatactcttttactaaaggagagttggtggtgttttcagcgttgaaattat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39521573 |
gtttgaggtgtgaaagtgattgtgaatctttttctgatgattttaacgtaatactcttttactaaaggagagttggtggtgttttcagcgttgaaattat |
39521672 |
T |
|
| Q |
101 |
gtaacagaatgaaaccaggaactgaaacggtgaattttgcagaggaaaggttagttggtgaagagaatgaaaagaaatgaaaacgtaccatgtaagtgtt |
200 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
39521673 |
gtaacagaaggaaaccaggaactgaaacggtgaattttgcagaggaaaggttagttggtgaagagaatgaaaagaaatggaaacgtaccatgtaagtgtt |
39521772 |
T |
|
| Q |
201 |
gtttggaacggttttgaattcataggaagaattggaaaggaaaattcttgctgtttggttgagaggtgaagacactggtgattgacttgttacgttggag |
300 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
39521773 |
gcttggaacggttttgaattcataggaagaattggaaaggaaaattcttgctgtttggttgagaggtgaagacactggtgattgacttgttactttggag |
39521872 |
T |
|
| Q |
301 |
ttactttcgctgaataattttttcgggtaagcatggtttgattcaccaatataatggttgttattttcatccacgtcgacatctgatccacaattgatga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
39521873 |
ttactttcgctgaataattttttcgggtaagcatggtttgattcaccaatataaaggttgttattttcattcacgtcgatatctgatccacaattgatga |
39521972 |
T |
|
| Q |
401 |
agtatgtgtcttgaggatcgtatccgagtgaggggaattgtaatgatgagaattgaagnnnnnnngcaagtagaaagatagagcgttgaattgtgtggaa |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
39521973 |
agtatgtgtcttgaggatcgtatccgagtgaggggaattgtaatgatgagaattgaagaaaaaaagcaaggagaaagatagagcgttgaattgtgtggaa |
39522072 |
T |
|
| Q |
501 |
gtgaaaggttgacatagtgagagaggaaaattgtgtttgtttgatgannnnnnnnaagttatgaaattgatgat |
574 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
39522073 |
gtgaaaggttgacatggtgagagaggaaaattgtgtttgtttgatgattttttttaagttatgaaattgatgat |
39522146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 1 - 458
Target Start/End: Original strand, 39544366 - 39544820
Alignment:
| Q |
1 |
gtttgaggtgtgaaagtgattgtgaatctttttctgatgattttaacgtaatactcttttactaaaggagagttggtggtgttttcagcgttgaaattat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| | |
|
|
| T |
39544366 |
gtttgaggtgtgaaagtgattgtgaatctttttctgatgattttaacgtaatactcttttactaaagaagagttggtggtgttttcagagttgaaatttt |
39544465 |
T |
|
| Q |
101 |
gtaacagaatgaaaccaggaactgaaacggtgaattttgcagaggaaaggttagttggtgaagagaatgaaaagaaatgaaaacgtaccatgtaagtgtt |
200 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||| |
|
|
| T |
39544466 |
gtaacagaatgaaaccagggactgaaacattgaattttgcagaggaaaggttagttggtgaagagaatgaaaagaaatggaaacataccatgtaggtgtt |
39544565 |
T |
|
| Q |
201 |
gtttggaacggttttgaattcataggaagaattggaaaggaaaattcttgctgtttggttgagaggtgaagacactggtgattgacttgttacgttggag |
300 |
Q |
| |
|
|||||| | ||| |||||||||||||| | |||| |||| || ||||||||||||| |||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
39544566 |
gtttggtatggtagaaaattcataggaagactcggaatggaatatccttgctgtttggtagagaggtgaaaacactggtgattgacttgttactttggag |
39544665 |
T |
|
| Q |
301 |
ttactttcgctgaataattttttcgggtaagcatggtttgattcaccaatataatggttgttattttcatccacgtcgacatctgatccacaattgatga |
400 |
Q |
| |
|
|||| ||||| | |||| ||||||| | |||||||||||||||||||| ||||||||||||||| |||||| | ||||||||| |||||||||| |
|
|
| T |
39544666 |
---ctttttctgaaacttgtttttgggtaagtagggtttgattcaccaatataaaggttgttattttcattcacgtcaatatctgatccgcaattgatga |
39544762 |
T |
|
| Q |
401 |
agtatgtgtcttgaggatcgtatccgagtgaggggaattgtaatgatgagaattgaag |
458 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
39544763 |
agtatgtgtcttggtgatcgtatccgagtgagggaaattgtaatgatgcgaattgaag |
39544820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 458
Target Start/End: Original strand, 39576218 - 39576675
Alignment:
| Q |
1 |
gtttgaggtgtgaaagtgattgtgaatctttttctgatgattttaacgtaatactcttttactaaaggagagttggtggtgttttcagcgttgaaattat |
100 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
39576218 |
gtttgaggtgtgaatatgattttgaatctttttctaatgattttaacgtaatactcttttactaaagcagatttggtggtgttttcagcgttgaaattat |
39576317 |
T |
|
| Q |
101 |
gtaacagaatgaaaccaggaactgaaacggtgaattttgcagaggaaaggttagttggtgaagagaatgaaaagaaatgaaaacgtaccatgtaagtgtt |
200 |
Q |
| |
|
||||||||| |||||||||||| |||| | |||||||||||| |||||| ||||||||||||||||||||||||||| | ||||||||||| |||||||| |
|
|
| T |
39576318 |
gtaacagaaggaaaccaggaacggaaatgttgaattttgcagtggaaagtttagttggtgaagagaatgaaaagaaacggaaacgtaccatataagtgtt |
39576417 |
T |
|
| Q |
201 |
gtttggaacggttttgaattcataggaagaattggaaaggaaaattcttgctgtttggttgagaggtgaagacactggtgattgacttgttacgttggag |
300 |
Q |
| |
|
|||||| | ||| ||||| ||||| || | ||| ||||||||||||||||||||| |||||||||||||||| |||| || | ||| | |||| |
|
|
| T |
39576418 |
gtttggtatggtagaaaattcgtaggaggattcagaatggaaaattcttgctgtttggtaaagaggtgaagacactgatgatggattggtttctatggaa |
39576517 |
T |
|
| Q |
301 |
ttactttcgctgaataattttttcgggtaagcatggtttgattcaccaatataatggttgttattttcatccacgtcgacatctgatccacaattgatga |
400 |
Q |
| |
|
| |||| ||||||| ||||||| |||||||||||||||||||||||||||||| | || |||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
39576518 |
cttctttggctgaatgattttttagggtaagcatggtttgattcaccaatataaagattcttattttcattcacgtcgatatctgatccacaattgatga |
39576617 |
T |
|
| Q |
401 |
agtatgtgtcttgaggatcgtatccgagtgaggggaattgtaatgatgagaattgaag |
458 |
Q |
| |
|
||||||| |||||| ||||||||||||||| ||||| |||| ||||||||||||||| |
|
|
| T |
39576618 |
agtatgtctcttgatgatcgtatccgagtgcagggaagtgtagtgatgagaattgaag |
39576675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 2 - 291
Target Start/End: Original strand, 39511328 - 39511617
Alignment:
| Q |
2 |
tttgaggtgtgaaagtgattgtgaatctttttctgatgattttaacgtaatactcttttactaaaggagagttggtggtgttttcagcgttgaaattatg |
101 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
39511328 |
tttgaggtgtgaaagtgattttgaatctttttctgatgatttgaacgtagtattcttttactaaaggagagttggtggtgttttcagcgttgaaattttg |
39511427 |
T |
|
| Q |
102 |
taacagaatgaaaccaggaactgaaacggtgaattttgcagaggaaaggttagttggtgaagagaatgaaaagaaatgaaaacgtaccatgtaagtgttg |
201 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||| ||||||||||| |||||| ||||||||||| || |||||| |
|
|
| T |
39511428 |
taacagaatgaaaccaggaactgaaacagtgaattttgcagtggaaagtttagttggtgtagagaatgaaaggaaatggaaacgtaccatataggtgttg |
39511527 |
T |
|
| Q |
202 |
tttggaacggttttgaattcataggaagaattggaaaggaaaattcttgctgtttggttgagaggtgaagacactggtgattgacttgtt |
291 |
Q |
| |
|
||||| | |||||||||||| || |||| | |||| ||||||| ||||| ||||||| ||||| ||||| |||| ||||||| ||||| |
|
|
| T |
39511528 |
tttgggatggttttgaattcgtaccaagattcggaacggaaaatccttgcagtttggtagagagatgaaggaactgatgattgatttgtt |
39511617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 2 - 287
Target Start/End: Original strand, 39525071 - 39525356
Alignment:
| Q |
2 |
tttgaggtgtgaaagtgattgtgaatctttttctgatgattttaacgtaatactcttttactaaaggagagttggtggtgttttcagcgttgaaattatg |
101 |
Q |
| |
|
||||||||||||| |||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || | |||||| || |
|
|
| T |
39525071 |
tttgaggtgtgaacgtgattttgaatttttttctgatgattttaaggtaatactcttttactaaaggagagttggtggtgttttttgcatcgaaattttg |
39525170 |
T |
|
| Q |
102 |
taacagaatgaaaccaggaactgaaacggtgaattttgcagaggaaaggttagttggtgaagagaatgaaaagaaatgaaaacgtaccatgtaagtgttg |
201 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
39525171 |
taacagaatgaaaccagggactgaaacggtgaattttgcagtggaaaggttaagtggtgaagagaatgaaaagaaatggaaacgtaccatgtaggtgttg |
39525270 |
T |
|
| Q |
202 |
tttggaacggttttgaattcataggaagaattggaaaggaaaattcttgctgtttggttgagaggtgaagacactggtgattgact |
287 |
Q |
| |
|
||||| ||||||||||| || || |||| | |||| | || || ||||||||||||| ||||||||||| ||||| ||||||||| |
|
|
| T |
39525271 |
tttggtacggttttgaactcgtataaagattcggaatgaaatatccttgctgtttggtagagaggtgaaggcactgatgattgact |
39525356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 94 - 458
Target Start/End: Original strand, 39580840 - 39581216
Alignment:
| Q |
94 |
aaattatgtaacagaatgaaaccaggaactgaaacggtgaattttgcagaggaaaggttagttggtgaagagaatgaaaagaaatgaaaacgtaccatgt |
193 |
Q |
| |
|
||||| ||||||||| |||||| |||| |||||| |||||||||||| |||||| ||||||||| |||||||| ||||||||| ||||||||||||| |
|
|
| T |
39580840 |
aaattttgtaacagagagaaacctggaaaggaaacgttgaattttgcagtggaaagattagttggtaaagagaatagaaagaaatggaaacgtaccatgt |
39580939 |
T |
|
| Q |
194 |
aagtgttgtttggaacggttttgaattcataggaagaattggaaaggaaaattcttgctgtttggttgagaggtgaa---------gaca---ctggtga |
281 |
Q |
| |
|
||||||||||||| |||||||||||||| ||| |||| |||||| |||| || |||||||||||| |||||||||| || | || ||| |
|
|
| T |
39580940 |
aagtgttgtttggtacggttttgaattcgtagaaagatttggaagggaatataattgctgtttggtagagaggtgaaagtggtgttgatagtgatgatga |
39581039 |
T |
|
| Q |
282 |
ttgacttgttacgttggagttactttcgctgaataattttttcgggtaagcatggtttgattcaccaatataatggttgttattttcatccacgtcgaca |
381 |
Q |
| |
|
|||||||||||| |||||| |||| |||||| | | ||||||| |||| | |||||||||||||||||||| ||||||| ||||| || || | | |
|
|
| T |
39581040 |
ttgacttgttactttggag---cttttgctgaaaactgttttcggataagtagggtttgattcaccaatataaacgttgttactttcagtaacatcaaaa |
39581136 |
T |
|
| Q |
382 |
tctgatccacaattgatgaagtatgtgtcttgaggatcgt---atccgagtgaggggaattgtaatgatgagaattgaag |
458 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||| |||| | ||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
39581137 |
tctgatccgcaattgatgaagtatgtgtgttggggattatataatccgagcgaggaaaattgtaatgatgagaattgaag |
39581216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 381 - 457
Target Start/End: Original strand, 39525453 - 39525529
Alignment:
| Q |
381 |
atctgatccacaattgatgaagtatgtgtcttgaggatcgtatccgagtgaggggaattgtaatgatgagaattgaa |
457 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||| |||||||||||| |||||||| | ||||||||||||||||| |
|
|
| T |
39525453 |
atctgatccacaactgatgaagtatatgtcttgttcatcgtatccgagcgaggggaagtataatgatgagaattgaa |
39525529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 381 - 458
Target Start/End: Original strand, 39581850 - 39581927
Alignment:
| Q |
381 |
atctgatccacaattgatgaagtatgtgtcttgaggatcgtatccgagtgaggggaattgtaatgatgagaattgaag |
458 |
Q |
| |
|
|||| |||||||| ||||||||||| ||||||| ||||||||| ||||||| ||| |||||||||||||||||||| |
|
|
| T |
39581850 |
atcttatccacaactgatgaagtatatgtcttggtcatcgtatccaagtgaggcgaactgtaatgatgagaattgaag |
39581927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 39580758 - 39580816
Alignment:
| Q |
1 |
gtttgaggtgtgaaagtgattgtgaatctttttctgatgattttaacgtaatactcttt |
59 |
Q |
| |
|
||||||||||||||||||||| |||||||||| | | ||||||||| | |||| ||||| |
|
|
| T |
39580758 |
gtttgaggtgtgaaagtgattttgaatcttttacgggtgattttaaagaaatattcttt |
39580816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 117; Significance: 3e-59; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 3331696 - 3331509
Alignment:
| Q |
18 |
gattgtgaatctttttctgatgattttaacgtaatactcttttactaaaggagagttggtggtgttttcagcgttgaaattatgtaacagaatgaaacca |
117 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||| |||||| |
|
|
| T |
3331696 |
gattgtgaatctttttatgatgattttaacgtaatactcttttactaaaggagagttggtggtgtttttagcgtcgaaattagttaacagaaggaaaccg |
3331597 |
T |
|
| Q |
118 |
ggaactgaaacggtgaattttgcagaggaaaggttagttggtgaagagaatgaaaagaaatgaaaacgtaccatgtaagtgttgtttgg |
206 |
Q |
| |
|
| ||| |||| | |||| ||||||| |||||||||| |||||||||||||||||| |||||| |||||||||||||| ||||||||||| |
|
|
| T |
3331596 |
gaaacagaaatgttgaa-tttgcagtggaaaggttaattggtgaagagaatgaaaggaaatggaaacgtaccatgtaggtgttgtttgg |
3331509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University