View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4174_high_11 (Length: 233)

Name: NF4174_high_11
Description: NF4174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4174_high_11
NF4174_high_11
[»] chr6 (4 HSPs)
chr6 (38-137)||(32057331-32057430)
chr6 (135-174)||(32057247-32057286)
chr6 (1-41)||(392246-392286)
chr6 (1-41)||(32929504-32929544)
[»] scaffold0188 (1 HSPs)
scaffold0188 (8-47)||(6100-6139)
[»] chr1 (7 HSPs)
chr1 (1-42)||(18043312-18043353)
chr1 (1-45)||(48282851-48282895)
chr1 (1-49)||(51065736-51065784)
chr1 (1-39)||(19940546-19940584)
chr1 (1-38)||(29210544-29210581)
chr1 (1-42)||(29657921-29657962)
chr1 (1-41)||(42769986-42770026)
[»] chr7 (3 HSPs)
chr7 (1-40)||(29127251-29127290)
chr7 (8-42)||(34333440-34333474)
chr7 (1-37)||(24438627-24438663)
[»] chr4 (5 HSPs)
chr4 (6-37)||(15186392-15186423)
chr4 (1-40)||(16536198-16536237)
chr4 (1-38)||(16821002-16821039)
chr4 (7-40)||(29591345-29591378)
chr4 (7-39)||(3783496-3783528)
[»] chr3 (7 HSPs)
chr3 (1-40)||(43787021-43787060)
chr3 (1-39)||(36545126-36545164)
chr3 (1-39)||(36563150-36563188)
chr3 (1-39)||(52520831-52520869)
chr3 (1-37)||(272370-272406)
chr3 (1-41)||(18014822-18014862)
chr3 (1-37)||(49893481-49893517)
[»] chr2 (3 HSPs)
chr2 (1-40)||(20553081-20553120)
chr2 (2-31)||(5431641-5431670)
chr2 (1-37)||(30486360-30486396)
[»] chr5 (1 HSPs)
chr5 (1-38)||(34650832-34650869)
[»] chr8 (2 HSPs)
chr8 (12-40)||(23588780-23588808)
chr8 (1-37)||(34228832-34228868)


Alignment Details
Target: chr6 (Bit Score: 92; Significance: 8e-45; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 38 - 137
Target Start/End: Complemental strand, 32057430 - 32057331
Alignment:
Q  38 ttaaagtaaatattgggaatattctggcataaaaggttaacataaccatgaagaggatggtgaagaaaatgagaacttgtagggaaatagaatttgtaac 137  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  32057430 ttaaagtaaatattggtaatattctggcataaaaggttaacataaccatgaagaggatggtgaagaaaatgagaacttgtaggtaaatagaatttgtaac 32057331  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 174
Target Start/End: Complemental strand, 32057286 - 32057247
Alignment:
Q  135 aacacaaagataaggaggcatgcaccctttgttaattaga 174  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  32057286 aacacaaaggtaaggaggcatgcaccctttgttaattaga 32057247  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 392246 - 392286
Alignment:
Q  1 ttaatcagtgccccgggggcaccggttaacaggacccttaa 41  Q
    |||| ||||||||||||||||||||||| ||||||||||||    
T  392246 ttaaccagtgccccgggggcaccggttagcaggacccttaa 392286  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 32929544 - 32929504
Alignment:
Q  1 ttaatcagtgccccgggggcaccggttaacaggacccttaa 41  Q
    |||| ||||||||||||||||||||||| ||||||||||||    
T  32929544 ttaaccagtgccccgggggcaccggttagcaggacccttaa 32929504  T

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Target: scaffold0188 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 6139 - 6100
Alignment:
Q  8 gtgccccgggggcaccggttaacaggacccttaaagtaaa 47  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  6139 gtgccccgggggcaccggttagcaggacccttaaagtaaa 6100  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 18043312 - 18043353
Alignment:
Q  1 ttaatcagtgccccgggggcaccggttaacaggacccttaaa 42  Q
    |||| ||||||||||||||||||||||| |||||||||||||    
T  18043312 ttaaccagtgccccgggggcaccggttagcaggacccttaaa 18043353  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 48282895 - 48282851
Alignment:
Q  1 ttaatcagtgccccgggggcaccggttaacaggacccttaaagta 45  Q
    |||| |||||||||||||||||||||||||| ||||||| |||||    
T  48282895 ttaaccagtgccccgggggcaccggttaacaagaccctttaagta 48282851  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 51065784 - 51065736
Alignment:
Q  1 ttaatcagtgccccgggggcaccggttaacaggacccttaaagtaaata 49  Q
    |||| ||||||||| ||||||||||||| |||||||||||||| |||||    
T  51065784 ttaaccagtgccccaggggcaccggttagcaggacccttaaagaaaata 51065736  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 19940584 - 19940546
Alignment:
Q  1 ttaatcagtgccccgggggcaccggttaacaggaccctt 39  Q
    |||| |||||||||||||||||||||||||| |||||||    
T  19940584 ttaaccagtgccccgggggcaccggttaacatgaccctt 19940546  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 29210544 - 29210581
Alignment:
Q  1 ttaatcagtgccccgggggcaccggttaacaggaccct 38  Q
    |||| ||||||||||||||||||||||| |||||||||    
T  29210544 ttaaccagtgccccgggggcaccggttagcaggaccct 29210581  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 29657921 - 29657962
Alignment:
Q  1 ttaatcagtgccccgggggcaccggttaacaggacccttaaa 42  Q
    |||| |||||||| |||||||||||||| |||||||||||||    
T  29657921 ttaaccagtgccctgggggcaccggttagcaggacccttaaa 29657962  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 42770026 - 42769986
Alignment:
Q  1 ttaatcagtgccccgggggcaccggttaacaggacccttaa 41  Q
    |||| ||||||||||||||||||||||| ||| ||||||||    
T  42770026 ttaaccagtgccccgggggcaccggttagcagaacccttaa 42769986  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 29127290 - 29127251
Alignment:
Q  1 ttaatcagtgccccgggggcaccggttaacaggaccctta 40  Q
    |||||| |||||||||||||||||||||||||||| ||||    
T  29127290 ttaatccgtgccccgggggcaccggttaacaggactctta 29127251  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 34333440 - 34333474
Alignment:
Q  8 gtgccccgggggcaccggttaacaggacccttaaa 42  Q
    ||||||||||||||||||||| |||||||||||||    
T  34333440 gtgccccgggggcaccggttagcaggacccttaaa 34333474  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 24438627 - 24438663
Alignment:
Q  1 ttaatcagtgccccgggggcaccggttaacaggaccc 37  Q
    |||| ||||||||||||||||||||||| ||||||||    
T  24438627 ttaaccagtgccccgggggcaccggttagcaggaccc 24438663  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 37
Target Start/End: Original strand, 15186392 - 15186423
Alignment:
Q  6 cagtgccccgggggcaccggttaacaggaccc 37  Q
    ||||||||||||||||||||||||||||||||    
T  15186392 cagtgccccgggggcaccggttaacaggaccc 15186423  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 16536198 - 16536237
Alignment:
Q  1 ttaatcagtgccccgggggcaccggttaacaggaccctta 40  Q
    |||| ||||||||||||||||||||||| |||||||||||    
T  16536198 ttaaccagtgccccgggggcaccggttagcaggaccctta 16536237  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 16821002 - 16821039
Alignment:
Q  1 ttaatcagtgccccgggggcaccggttaacaggaccct 38  Q
    |||| ||||||||||||||||||||||| |||||||||    
T  16821002 ttaaccagtgccccgggggcaccggttagcaggaccct 16821039  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 40
Target Start/End: Original strand, 29591345 - 29591378
Alignment:
Q  7 agtgccccgggggcaccggttaacaggaccctta 40  Q
    |||||||||||||||||||||| |||||||||||    
T  29591345 agtgccccgggggcaccggttagcaggaccctta 29591378  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 39
Target Start/End: Complemental strand, 3783528 - 3783496
Alignment:
Q  7 agtgccccgggggcaccggttaacaggaccctt 39  Q
    ||||||||||| |||||||||||||||||||||    
T  3783528 agtgccccgggagcaccggttaacaggaccctt 3783496  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 43787021 - 43787060
Alignment:
Q  1 ttaatcagtgccccgggggcaccggttaacaggaccctta 40  Q
    |||| ||||||||||||||||||||||| |||||||||||    
T  43787021 ttaaccagtgccccgggggcaccggttagcaggaccctta 43787060  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 36545164 - 36545126
Alignment:
Q  1 ttaatcagtgccccgggggcaccggttaacaggaccctt 39  Q
    |||| |||||||||||||||||||||||||| |||||||    
T  36545164 ttaaccagtgccccgggggcaccggttaacaagaccctt 36545126  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 36563150 - 36563188
Alignment:
Q  1 ttaatcagtgccccgggggcaccggttaacaggaccctt 39  Q
    |||| |||||||||||||||||||||||||| |||||||    
T  36563150 ttaaccagtgccccgggggcaccggttaacaagaccctt 36563188  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 52520831 - 52520869
Alignment:
Q  1 ttaatcagtgccccgggggcaccggttaacaggaccctt 39  Q
    |||| ||||||||||||||||||||||| ||||||||||    
T  52520831 ttaaccagtgccccgggggcaccggttagcaggaccctt 52520869  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 272370 - 272406
Alignment:
Q  1 ttaatcagtgccccgggggcaccggttaacaggaccc 37  Q
    |||||| ||||||||||||||||||||| ||||||||    
T  272370 ttaatcggtgccccgggggcaccggttagcaggaccc 272406  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 18014822 - 18014862
Alignment:
Q  1 ttaatcagtgccccgggggcaccggttaacaggacccttaa 41  Q
    ||||||||||||||||||||||| |||| || |||||||||    
T  18014822 ttaatcagtgccccgggggcaccagttagcaagacccttaa 18014862  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 49893481 - 49893517
Alignment:
Q  1 ttaatcagtgccccgggggcaccggttaacaggaccc 37  Q
    |||||||||||||||||||||||||||| | ||||||    
T  49893481 ttaatcagtgccccgggggcaccggttagccggaccc 49893517  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 20553081 - 20553120
Alignment:
Q  1 ttaatcagtgccccgggggcaccggttaacaggaccctta 40  Q
    |||| ||||||||||||||||||||||| |||||||||||    
T  20553081 ttaaccagtgccccgggggcaccggttagcaggaccctta 20553120  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 31
Target Start/End: Complemental strand, 5431670 - 5431641
Alignment:
Q  2 taatcagtgccccgggggcaccggttaaca 31  Q
    ||||||||||||||||||||||||||||||    
T  5431670 taatcagtgccccgggggcaccggttaaca 5431641  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 30486360 - 30486396
Alignment:
Q  1 ttaatcagtgccccgggggcaccggttaacaggaccc 37  Q
    |||| ||||||||||||||||||||||| ||||||||    
T  30486360 ttaaccagtgccccgggggcaccggttagcaggaccc 30486396  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 34650869 - 34650832
Alignment:
Q  1 ttaatcagtgccccgggggcaccggttaacaggaccct 38  Q
    |||| ||||||||||||||||||||||| |||||||||    
T  34650869 ttaaccagtgccccgggggcaccggttagcaggaccct 34650832  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 40
Target Start/End: Original strand, 23588780 - 23588808
Alignment:
Q  12 cccgggggcaccggttaacaggaccctta 40  Q
    |||||||||||||||||||||||||||||    
T  23588780 cccgggggcaccggttaacaggaccctta 23588808  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 34228832 - 34228868
Alignment:
Q  1 ttaatcagtgccccgggggcaccggttaacaggaccc 37  Q
    |||| ||||||||||||||||||||||| ||||||||    
T  34228832 ttaaccagtgccccgggggcaccggttagcaggaccc 34228868  T

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