View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4174_high_12 (Length: 231)
Name: NF4174_high_12
Description: NF4174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4174_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 33658213 - 33658012
Alignment:
| Q |
14 |
gagaagaacccgatcacaattaataaaagagaaatgctaataagtatcattagggtactcgttagcgacccttagtaaaataacctttttcaattcatgg |
113 |
Q |
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| T |
33658213 |
gagaagaacccgatcacaatttataaaagagaaatgctaataagtgtcattagggtactcgttagcgacccttagtaaaataacctttttcaattcatgg |
33658114 |
T |
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| Q |
114 |
aaagcattaataacttgtccggtagaaacccaagaatccaaggaggaaataacttgggtttctatataagggatcaatttcttgattgattcaggagaaa |
213 |
Q |
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| T |
33658113 |
aaagcattaataacttgtccggtagaaacccaagaatccaaggaggaaataacttgggtttctatataagggatcaatttcttgattgattcaggagaaa |
33658014 |
T |
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| Q |
214 |
gt |
215 |
Q |
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|| |
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| T |
33658013 |
gt |
33658012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 95 - 210
Target Start/End: Complemental strand, 33698667 - 33698552
Alignment:
| Q |
95 |
aacctttttcaattcatggaaagcattaataacttgtccggtagaaacccaagaatccaaggaggaaataacttgggtttctatataagggatcaatttc |
194 |
Q |
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| T |
33698667 |
aacctttttcatttcatggaaagcgttgatgacttgtccaatagaaacccaggattctaatgaggaaatgacttcattttcaatatcagggatcaatttc |
33698568 |
T |
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| Q |
195 |
ttgattgattcaggag |
210 |
Q |
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| T |
33698567 |
ttgattgattcaggag |
33698552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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