View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4174_high_13 (Length: 226)
Name: NF4174_high_13
Description: NF4174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4174_high_13 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 6 - 226
Target Start/End: Complemental strand, 48062092 - 48061872
Alignment:
| Q |
6 |
aagatggatagtttatctatctgttttcatctgtttgcnnnnnnngtaaacaatatgtgacaggtttcattcacattacagttacaagccacattccatg |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48062092 |
aagatggatagtttatctatctgttttcatctgtttgcaaaaaaagtaaacaatatatgacaggtttcattcacattacagttacaagccacattccatg |
48061993 |
T |
|
| Q |
106 |
acaggaacaaatagaaaatgaacatttctttcgcattttttgcttgtttggcaggcagagtactttgaagagattcttagagaaggtttctctcatcctg |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
48061992 |
acaggaacaaatagaaaatgaacatttcttttgcattttttgcttgtttggcaggcagagtactttgaagagattcttagagaaggttactctcatcctg |
48061893 |
T |
|
| Q |
206 |
ctgtgcaagggattgtaatgt |
226 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
48061892 |
ctgtgcaagggattgtaatgt |
48061872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 224
Target Start/End: Complemental strand, 48098998 - 48098878
Alignment:
| Q |
103 |
atgacaggaacaaatagaaaatgaacatttctttcgcattttttgcttgtttggcaggcagagtactttgaagagattcttagagaaggtttctctcatc |
202 |
Q |
| |
|
|||||| ||||||| |||||| |||||||||||| |||||||| ||||| ||||||||||||| ||||||| | || ||||| | || |||||||| |
|
|
| T |
48098998 |
atgacaagaacaaacggaaaataaacatttctttctcattttttt-ttgttgggcaggcagagtatcttgaagacgtgctaagagaggcttactctcatc |
48098900 |
T |
|
| Q |
203 |
ctgctgtgcaagggattgtaat |
224 |
Q |
| |
|
| ||||| ||||||||| |||| |
|
|
| T |
48098899 |
cagctgttcaagggattataat |
48098878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University