View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4174_high_3 (Length: 403)
Name: NF4174_high_3
Description: NF4174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4174_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 133 - 394
Target Start/End: Original strand, 11441491 - 11441752
Alignment:
| Q |
133 |
aaaaataatttcaaagcaagtgaaatcagcatttagataccaacaacaataacaatgaaaaataactcaagcaatcatataaattatggatcatgacttg |
232 |
Q |
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| T |
11441491 |
aaaaaaaaattcaaagctagtgaaatcagcatttagataccaacaacaataacaatgaaaaataactcaagcaatcatataaattatggatcatgacttg |
11441590 |
T |
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| Q |
233 |
cattctttaaataagactattttattccgaggtctttacctgtataaaatcaacatgagggaaagcttggacaaaatcatttatagcttttgtggttaaa |
332 |
Q |
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| T |
11441591 |
cattctttaaataagactattttattccgaggtttgtacctgtataaaatcaacatgagggaaagcttggacaaaatcatttatagcttttgtggttaaa |
11441690 |
T |
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| Q |
333 |
ggcgctgcactagaaccgacctgtctcaaactctgcaacttacttccatttacaccctttgc |
394 |
Q |
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| T |
11441691 |
ggcgctgcactagaaccgacctgtctcaaactctgcaacttacttccatttacaccctttgc |
11441752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 179 - 382
Target Start/End: Original strand, 11452073 - 11452277
Alignment:
| Q |
179 |
caataacaatgaaaaataactcaagcaatcatataaattatggatcatgacttgcattctttaaataagactattttattccgaggt-ctttacctgtat |
277 |
Q |
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| T |
11452073 |
caatagcaaagaaaaataactcaatcaattatataaatgatggagcatgacttgcattcttcaattaaggttaatttgctccaaggttctttacctgtat |
11452172 |
T |
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| Q |
278 |
aaaatcaacatgagggaaagcttggacaaaatcatttatagcttttgtggttaaaggcgctgcactagaaccgacctgtctcaaactctgcaacttactt |
377 |
Q |
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| T |
11452173 |
aaaatcaacattagggaaagcttggacaaaatcttttatagctcctttgctcaaaggctctgcaccgcaagagacatgtcttaaactctgcaacttactt |
11452272 |
T |
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| Q |
378 |
ccatt |
382 |
Q |
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||||| |
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| T |
11452273 |
ccatt |
11452277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 195 - 394
Target Start/End: Complemental strand, 29912706 - 29912499
Alignment:
| Q |
195 |
taactcaagcaatcatataaattatggatcatgacttgcattctttaaataaga-------ctattttattccgaggt-ctttacctgtataaaatcaac |
286 |
Q |
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| T |
29912706 |
taactcaagcaatcatataaacgatggagcattacttgcattctctaattaagagtcaagactattctattcaaaggttctttacctgtataaaatcaac |
29912607 |
T |
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| Q |
287 |
atgagggaaagcttggacaaaatcatttatagcttttgtggttaaaggcgctgcactagaaccgacctgtctcaaactctgcaacttacttccatttaca |
386 |
Q |
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| T |
29912606 |
gttagggaaagcatggacaaaactactaataactcctatgctcaaaggcgctgcaccgcaagagacctgtctcaaactctgcaacttaattccattaaca |
29912507 |
T |
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| Q |
387 |
ccctttgc |
394 |
Q |
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|||||||| |
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| T |
29912506 |
ccctttgc |
29912499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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