View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4174_high_6 (Length: 290)
Name: NF4174_high_6
Description: NF4174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4174_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 15 - 273
Target Start/End: Complemental strand, 33455415 - 33455157
Alignment:
| Q |
15 |
atcataggaataaaaataaaatatcagtcatgcataaattaagaatgaagaaacttactggaaaattattaggagaggggatgttgaaactaaaacggga |
114 |
Q |
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| T |
33455415 |
atcatagaaataaaaataaaatatcagtcatgcataaattaagaatgaagaaacttactggaaaattattaggagatgggatgttgaaactaaaacggga |
33455316 |
T |
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| Q |
115 |
agaaaatggtttgtgggattagttaaaagtggtttttgttggactcaaagcggtttattgtgctaattgaggagttttaggttttggtgtttggaccaat |
214 |
Q |
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| T |
33455315 |
agaaaatggtttgtgggattagttaaaagtggtttttgttggactcaaagcggtttattgtgctaattgaggagtttcaggttttggtgtttggaccaat |
33455216 |
T |
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| Q |
215 |
gaacattgagcaaggacagaaagatacgttttaagaattctcaaatgagaatcacaaac |
273 |
Q |
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| T |
33455215 |
gaacattgagcaagtacagaagaatatgttttaagaattctcaaatgagaatcacaaac |
33455157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 61 - 273
Target Start/End: Original strand, 36926004 - 36926217
Alignment:
| Q |
61 |
gaagaaacttactggaaaattattaggagaggggatgttgaaactaaaacgggaagaaaatggtttgtgggattagttaaaagtggtttttgttggactc |
160 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
36926004 |
gaagaaacttactggaggattattaggagaggggatgttgaaactaaaacgggaagaaaatggtttgtggaattaattaaaagtggtttttgttggactc |
36926103 |
T |
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| Q |
161 |
aaagcggtttattgtgctaattgaggagttttaggttttggtgtttggaccaatgaacattgagcaaggacagaaagatacgtttta-agaattctcaaa |
259 |
Q |
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| T |
36926104 |
aaagcggtttattgtgctgatcgagaagtttaaggttttggtgtttgggccaatgagcaatgagcaaggacagaaaaatatgtttaagaaaattgtcaaa |
36926203 |
T |
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| Q |
260 |
tgagaatcacaaac |
273 |
Q |
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|||||||||||||| |
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| T |
36926204 |
tgagaatcacaaac |
36926217 |
T |
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