View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4174_high_8 (Length: 248)
Name: NF4174_high_8
Description: NF4174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4174_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 41807712 - 41807930
Alignment:
| Q |
18 |
catctagcttacacaatgcagcaatgtgcccatcagctaaatcaacaacatgaatgtaatcacggacctgagaaaaagacaaagatttatcatgtaagat |
117 |
Q |
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| T |
41807712 |
catctagcttacacaatgcagcaatgtgcccatcagctaaatcaacaacatgaatgtaatcacggacctgagaaaaagacaaagatttatcatgtaagat |
41807811 |
T |
|
| Q |
118 |
cctcaaaagaaatcaaaggtatatcttaacaaatggtaagaatggaccaactatgacatcattattatcaaaataatgcaaatcgaatttaaatttcctg |
217 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41807812 |
cctcaaaagaaatcaaaggtagatcttaacaaatggtaagaatggaccaactatgacatcattattatcaaaataatgcaaatcgaatttaaatttcctg |
41807911 |
T |
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| Q |
218 |
cattgtctttagtttccta |
236 |
Q |
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||||||||||||||||||| |
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| T |
41807912 |
cattgtctttagtttccta |
41807930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 42030933 - 42030825
Alignment:
| Q |
18 |
catctagcttacacaatgcagcaatgtgcccatcagctaaatcaacaacatgaatgtaatcacggacctgagaaaaagacaaagatttatcatgtaagat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42030933 |
catctagcttacacaatgcagcaatgtgcccatcagctaaatcaacaacatgaatgtaatcacggacctgagaaaaagacaaagatttatcatgtaagat |
42030834 |
T |
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| Q |
118 |
cctcaaaag |
126 |
Q |
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||||||||| |
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| T |
42030833 |
cctcaaaag |
42030825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 109 - 204
Target Start/End: Complemental strand, 42030808 - 42030701
Alignment:
| Q |
109 |
atgtaagatcctcaaaagaaatcaaaggtatatcttaacaaatg------------gtaagaatggaccaactatgacatcattattatcaaaataatgc |
196 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| || ||||||||||||||||||||| | |
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| T |
42030808 |
atgtaagatcctcaaaagaaatcaaaggtagatcttaacaaatgggaattacgcatgtaagaatggaccaactgtggcatcattattatcaaaataatcc |
42030709 |
T |
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| Q |
197 |
aaatcgaa |
204 |
Q |
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|||||||| |
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| T |
42030708 |
aaatcgaa |
42030701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 2131398 - 2131469
Alignment:
| Q |
20 |
tctagcttacacaatgcagcaatgtgcccatcagctaaatcaacaacatgaatgtaatcacggacctgagaa |
91 |
Q |
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||||| |||| |||||||||||| || |||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
2131398 |
tctagtttacgcaatgcagcaatatggccatcagctaaatcaacaacatgaatgtaatcccgaacctgagaa |
2131469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 2126846 - 2126906
Alignment:
| Q |
31 |
caatgcagcaatgtgcccatcagctaaatcaacaacatgaatgtaatcacggacctgagaa |
91 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||| |||| || |||| |||| |
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| T |
2126846 |
caatgcagcaatgtgcccatctgctaaatcaacaacatgaatgaaatcccgaacctaagaa |
2126906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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