View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4174_low_4 (Length: 371)
Name: NF4174_low_4
Description: NF4174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4174_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 18 - 359
Target Start/End: Original strand, 6453677 - 6454018
Alignment:
| Q |
18 |
cccttctcctaaatcaacaataatattgtatcaatctatgatgctacaacaatttaaaatgataaatacaaaataattaaaaggatattaatgtatccaa |
117 |
Q |
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| T |
6453677 |
cccttctcctaaatcagcaataatattgtatcaatctatgatgctacaacaatttaaaatgatatatacaaaataattaaaaggatattaatgtatccaa |
6453776 |
T |
|
| Q |
118 |
ttcatgttgtgactaataaaaattcacctgagcttgtccaacggcttggccggtttgttggcttgcattctgggattgattcatctttggtttctctttt |
217 |
Q |
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| T |
6453777 |
ttcatgttgtgactaataaaaattcacctgagcttgtccaacggcttggccagtttgttggcttgcattctgggattgattcatctttgttttctctttt |
6453876 |
T |
|
| Q |
218 |
atattttgaaaaataataatttaactcagcaagtgctactttgtttggtgaatgtaattcataataataatgatgtgcatatatacagcttttcaaattt |
317 |
Q |
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| T |
6453877 |
agattttgaaaaataataatttaactcagcaagtgctactttgcttggtgaatataattcataataataatgatgtgcatatatatagcttttcaaattt |
6453976 |
T |
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| Q |
318 |
atgagttatgtgacacatgtaattatttctaccatttatctg |
359 |
Q |
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| T |
6453977 |
atgagttatgtgacacatgtaattatttctaccatttatctg |
6454018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 358
Target Start/End: Original strand, 6464420 - 6464755
Alignment:
| Q |
18 |
cccttctcctaaatcaacaataatattgtatcaatctatgatgctacaacaatttaaaatgataaatacaaaataattaaaaggatattaatgtatccaa |
117 |
Q |
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| T |
6464420 |
cccttctcctaaatcagcaaaaatatcgtatcaaactatgatgctacaaaaatttaaaatgatatatacaaactaattaaaagggcat----gtc-ccat |
6464514 |
T |
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| Q |
118 |
ttcatgttgtgactaataaaaattcacctgagcttgtccaacggcttggccggtttgttggcttgcattctgggattgattcatctttggtttctctttt |
217 |
Q |
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| T |
6464515 |
tgcaggttgggactaaaaaaaactcacctgagcttgtcccactgcttggccagtttgttggcttgcattctgggattgattcatctttggtttctcttta |
6464614 |
T |
|
| Q |
218 |
atattttgaaaaataataatttaactcagcaagtgctactttgtttggtgaatgtaattcataataataatgatgtgcatatatacagcttttcaaattt |
317 |
Q |
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| T |
6464615 |
agatttagaaaagtaataatttaactgaacaagtgctactttgcttggtgaatgtaatttataataataatgatgtgcatgtatatagcttttcaaattt |
6464714 |
T |
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| Q |
318 |
atgagttatgtgacacatgtaattatttctaccatttatct |
358 |
Q |
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| T |
6464715 |
atgagttgtgtgacacatggaattatctctaccatttatct |
6464755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 134 - 276
Target Start/End: Original strand, 44942835 - 44942978
Alignment:
| Q |
134 |
taaaaattcacctgagcttgtccaacggcttggccggtttgttggcttgcattctgggattgattcatctttggtttctctttta-tattttgaaaaata |
232 |
Q |
| |
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|||||| |||||||||||||||||||||||||| | | ||| | |||| |||||| ||||||| |||||||| ||||||||| | || |||| ||||| |
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| T |
44942835 |
taaaaactcacctgagcttgtccaacggcttggtcagcttgattgcttatattctgtgattgatccatctttgatttctctttgagaatcttgacaaata |
44942934 |
T |
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| Q |
233 |
ataatttaactcagcaagtgctactttgtttggtgaatgtaatt |
276 |
Q |
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| T |
44942935 |
aaagggtaacttaaaaagtgctactttgcttagtgaatgtaatt |
44942978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 134 - 361
Target Start/End: Complemental strand, 52950463 - 52950236
Alignment:
| Q |
134 |
taaaaattcacctgagcttgtccaacggcttggccggtttgttggcttgcattctgggattgattcatctttggtttctcttttat-attttgaaaaata |
232 |
Q |
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|||||| ||| |||||||||||| | |||||||||| ||| ||||||| ||||||||||||||||||||||| |||||||||||| || ||| |||||| |
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| T |
52950463 |
taaaaactcatctgagcttgtcccgcagcttggccggcttgatggcttggattctgggattgattcatctttgttttctcttttatgatcttggaaaata |
52950364 |
T |
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| Q |
233 |
--ataatttaactcagcaagtgctactttgtttggtgaatgtaattcataataataatgatgtgcatatatacagcttttcaaatttatgagttatgtga |
330 |
Q |
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| ||| ||||||| ||||||||||||| ||||||||| |||||| ||| | ||| ||||||||||| | |||| | || ||||| || |||| |
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| T |
52950363 |
agaaaatataactca--aagtgctactttgcttggtgaatataattcttaagtactatgtggtgcatatatata-atttttattttcatgagctaagtga |
52950267 |
T |
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| Q |
331 |
cacatgtaattatttctaccatttatctgtg |
361 |
Q |
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||||||||||||| | |||||||||||||| |
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| T |
52950266 |
cacatgtaattatatgcaccatttatctgtg |
52950236 |
T |
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