View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4174_low_6 (Length: 293)
Name: NF4174_low_6
Description: NF4174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4174_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 51820000 - 51820270
Alignment:
| Q |
1 |
ccaattatttgaacactatttcagttctacnnnnnnngaaaagagaattgttacttcttttattatgactatcttacattactcccttttcctggcaaaa |
100 |
Q |
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| T |
51820000 |
ccaattatttgaacactatttcagttctacaaaaaaagaaaagggaattgttacttcttttattatgactatcttacattactcccttttcctggcaaaa |
51820099 |
T |
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| Q |
101 |
tttacaatccatagctaatttaaattgtgaaatagtggggatcccctttgtttgtaatcactgatccaaaaacttccactttctgaaattaaacacttca |
200 |
Q |
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| T |
51820100 |
tttacaatccatagctaatttaaattgtgaaatagtggggatcccctttg----taatcactgatccaaaaacttccactttctgaaattaaacacttca |
51820195 |
T |
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| Q |
201 |
tttatcattgacctcaattttctttccactcccatctttgctaataacaattccaaccaatttacaaggtacagc |
275 |
Q |
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| T |
51820196 |
tttatcattgacctcaattttctttccactcccatctttgctaataactattccaaccaatttacaaggtacagc |
51820270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 51819818 - 51819940
Alignment:
| Q |
1 |
ccaattatttgaacactatttcagttctacnnnnnnngaaaagagaattgttacttcttttattatgacta----tcttacattactcccttttcctggc |
96 |
Q |
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| T |
51819818 |
ccaattatttgaacactattttagttcta-taataaggaaaagagaatttttacttattttataatgactaagtatcttacattattccctcttccctgc |
51819916 |
T |
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| Q |
97 |
aaaatttacaatccatagctaatt |
120 |
Q |
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| T |
51819917 |
aaaatttacaatctatagcaaatt |
51819940 |
T |
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