View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4175_high_1 (Length: 734)
Name: NF4175_high_1
Description: NF4175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4175_high_1 |
 | |
|
| [»] scaffold0014 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 17 - 265
Target Start/End: Original strand, 33049731 - 33049978
Alignment:
| Q |
17 |
agaaacacaactgaggttcaacaaactgcaaacaaagatacgaagaagaaacatggaaatgcaatgtttctcattcactagtgtgtgaatagtgatattt |
116 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33049731 |
agaaacgcaactgaggttcaacaaactgcaaacaaagatacgaagaagaaacatggaaatgcaatgtttctcattcactagtgtgtgaatagtgatattt |
33049830 |
T |
|
| Q |
117 |
ttgagaagattatgcgttgtgaaaatgcgaaagaaacttgagatacacttgagagattgtattatggatatgaaaaattgaagaaagtgaggcttcaagc |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
33049831 |
ttgagaagattatgcgttgtgaaaatgcgaaagaaacttgagatacacttgagagattgtattatggatataaaaaattgaagaaagtgaggcttcaagc |
33049930 |
T |
|
| Q |
217 |
attaagaaaacaatacgagatgctgaatatggaggaaggtgaatatgtg |
265 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
33049931 |
attaagaaaacaatacgagatg-tgaatatggaggatggtgaatatgtg |
33049978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 391 - 697
Target Start/End: Original strand, 33049975 - 33050290
Alignment:
| Q |
391 |
tgtggtcttagaagaatccaaagatttggatgtgatgaagattgaagaacttcaagcaagccttgaagcact----------------gataggaacaaa |
474 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
33049975 |
tgtggtcttagaagaatccaaagatttggatgtgatgaagattgaagaacttcaagcaagccttgaagcacatgaattgaggttaaccgataggaacaaa |
33050074 |
T |
|
| Q |
475 |
gaaaaatccaaaggttttgcattagatcaagctttgcaagctcaatatacaaataaaaggaaatacaagaaaggaaagaattattggaatgataatgctt |
574 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
33050075 |
gaaaaatccaaaggttctgcattagatcaagctttgcaagctcaatatacaaataaaaggaaatgcaagaaaggaaagaattattggaatgataaagctt |
33050174 |
T |
|
| Q |
575 |
ccaagaatgatgaaggttcaagtaaaaataaagaaagcttcgagaaagaatgagattcaatgatataatcttaaaaaatgggggcattatgtatctgaat |
674 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33050175 |
ccaagaatgattaaggtt-------aaataaagaaagcttcgagaaagaaggagattcaatgatataatcttaaaaaatgggggcattatgtatctgaat |
33050267 |
T |
|
| Q |
675 |
gcaagtccaagaaagttccaagg |
697 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
33050268 |
tcaagtccaagaaagttccaagg |
33050290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 116 - 461
Target Start/End: Original strand, 9504236 - 9504581
Alignment:
| Q |
116 |
tttgagaagattatgcgttgtgaaaatgcgaaagaaacttgagatacacttgagagattgtattatggatatgaaaaattgaagaaagtgaggcttcaag |
215 |
Q |
| |
|
||||||||||| |||| || ||||| | ||| || || || |||||| | |||| |||||||||||| ||| || |||||||| ||||| |||||| |
|
|
| T |
9504236 |
tttgagaagatcatgcattatgaaagcgtgaaggagacatgggatacattagagaaattgtattatggtgatggtaagttgaagaaggtgagacttcaac |
9504335 |
T |
|
| Q |
216 |
cattaagaaaacaatacgagatgctgaatatggaggaaggtgaatatgtgagtcaatactttgataaactggtgaatctagcaaatcagatgataagaaa |
315 |
Q |
| |
|
| || |||| ||| || || || ||| ||||| |||| |||| ||| ||||||||||||||||| || | ||||| |||||||||||| ||| || |
|
|
| T |
9504336 |
ctttgagaagacagtatgaagtgttgacaatggaagaagaagaatctgttagtcaatactttgataaggtgatcaatcttacaaatcagatgacaaggaa |
9504435 |
T |
|
| Q |
316 |
taatgatacaatcactgaattgatgaagttagaaaaggttctcagaattttgacaccaagatttgatcatattgttgtggtcttagaagaatccaaagat |
415 |
Q |
| |
|
| ||| || ||||||| |||||||| | ||||||||||||| || || ||| ||||||||||||| ||||| |||| | |||| ||||| ||||| |
|
|
| T |
9504436 |
tggtgaaactgtcactgatgtgatgaaggtggaaaaggttctcaaaaccttaacatcaagatttgatcacattgtagtggccctagaggaatctaaagac |
9504535 |
T |
|
| Q |
416 |
ttggatgtgatgaagattgaagaacttcaagcaagccttgaagcac |
461 |
Q |
| |
|
|| ||| |||||||| || ||||| || | ||| |||||||||| |
|
|
| T |
9504536 |
ttagattctatgaagatagaggaactgcaggaaagtcttgaagcac |
9504581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 94; Significance: 2e-45; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 17 - 459
Target Start/End: Complemental strand, 28452571 - 28452125
Alignment:
| Q |
17 |
agaaacacaactgaggttcaacaaactgcaaacaaagatacgaagaagaaacatggaaatgcaatgtttctcattcactagtgtgtgaatagtgatattt |
116 |
Q |
| |
|
||||||||||| ||||||||||||| || | | |||||| ||||||| ||| |||| || ||||||||||||||||||| |||| ||| ||| |||| |
|
|
| T |
28452571 |
agaaacacaacagaggttcaacaaattggacataaagatgcgaagaaaaaagatgggaaatcaatgtttctcattcactatggtgttaatgatgagattt |
28452472 |
T |
|
| Q |
117 |
ttgagaagattatgcgttgtgaaaatgcgaaagaaacttgagatacacttgagagattgtattatggatatgaaaaattgaagaaagtgaggcttcaagc |
216 |
Q |
| |
|
| |||||||| |||| |||||||||||||| |||||||||||||| || |||| ||||||| |||| ||| ||| |||||||| ||| | |||||||| |
|
|
| T |
28452471 |
tggagaagatcatgcactgtgaaaatgcgaaggaaacttgagatactattaagaggttgtattctggagatggaaagttgaagaaggtgggacttcaagc |
28452372 |
T |
|
| Q |
217 |
attaagaaaacaatacgagatgctgaatatggaggaaggtgaatatgtgagtcaatactttgataaactggtgaatctagcaaatcagatgataagaaat |
316 |
Q |
| |
|
|||||| | |||||| | || || |||| |||||||||| | |||| | || ||| |||| ||| | ||||| ||||||| || | ||| ||| |
|
|
| T |
28452371 |
attaaggagacaataaaaattgttgtccatggcagaaggtgaatcagcgagtaagtattttaataatctgataaatcttacaaatcaaataaaaaggaat |
28452272 |
T |
|
| Q |
317 |
aatgatacaatcactgaattgatgaag----ttagaaaaggttctcagaattttgacaccaagatttgatcatattgttgtggtcttagaagaatccaaa |
412 |
Q |
| |
|
|| | || ||| ||||||||| |||| ||||| |||||| ||||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
28452271 |
tgagacatcattgttgatttgatgaagatatatagagaaggtaatcagaaccttgacaccaaggtttgatcatattgttgtagtcttagaagaatccaaa |
28452172 |
T |
|
| Q |
413 |
gatttggatgtgatgaagattgaagaacttcaagcaagccttgaagc |
459 |
Q |
| |
|
|||||||||||||| |||||||||||| | || ||||| |||||||| |
|
|
| T |
28452171 |
gatttggatgtgatcaagattgaagaattgcaggcaagtcttgaagc |
28452125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 655 - 695
Target Start/End: Complemental strand, 28451933 - 28451893
Alignment:
| Q |
655 |
ggggcattatgtatctgaatgcaagtccaagaaagttccaa |
695 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
28451933 |
ggggcattatgcatctgaatgcaagtctaagaaagttccaa |
28451893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 1e-27; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 194 - 461
Target Start/End: Complemental strand, 45504263 - 45503996
Alignment:
| Q |
194 |
ttgaagaaagtgaggcttcaagcattaagaaaacaatacgagatgctgaatatggaggaaggtgaatatgtgagtcaatactttgataaactggtgaatc |
293 |
Q |
| |
|
|||||||| ||||| |||||||| || |||| ||| || || || ||| ||||| |||| |||||||| ||||||||||||||||| || | |||| |
|
|
| T |
45504263 |
ttgaagaaggtgagacttcaagctttgagaagacagtatgaagtgttgacaatggaagaagaagaatatgttagtcaatactttgataaggtgatcaatc |
45504164 |
T |
|
| Q |
294 |
tagcaaatcagatgataagaaataatgatacaatcactgaattgatgaagttagaaaaggttctcagaattttgacaccaagatttgatcatattgttgt |
393 |
Q |
| |
|
|| |||||||||||||||| ||| ||| || ||||||| |||||||| | |||||||||||||||| || ||| ||||||||||||| ||||| || |
|
|
| T |
45504163 |
taacaaatcagatgataaggaatggtgaaactgtcactgatgtgatgaaggtggaaaaggttctcagaaccttaacatcaagatttgatcacattgtagt |
45504064 |
T |
|
| Q |
394 |
ggtcttagaagaatccaaagatttggatgtgatgaagattgaagaacttcaagcaagccttgaagcac |
461 |
Q |
| |
|
|| | |||| ||||| ||||| || ||| |||||||| || ||||| || ||||| |||||||||| |
|
|
| T |
45504063 |
ggccctagaggaatctaaagacttagattctatgaagatagaggaactgcaggcaagtcttgaagcac |
45503996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 194 - 461
Target Start/End: Complemental strand, 45496521 - 45496254
Alignment:
| Q |
194 |
ttgaagaaagtgaggcttcaagcattaagaaaacaatacgagatgctgaatatggaggaaggtgaatatgtgagtcaatactttgataaactggtgaatc |
293 |
Q |
| |
|
|||||||| ||||| |||||||| || |||| ||| || || || ||| ||||| |||| |||||||| ||||||||||||||||| || | |||| |
|
|
| T |
45496521 |
ttgaagaaggtgagacttcaagctttgagaagacagtatgaagtgttgacaatggaagaagaagaatatgttagtcaatactttgataaggtgatcaatc |
45496422 |
T |
|
| Q |
294 |
tagcaaatcagatgataagaaataatgatacaatcactgaattgatgaagttagaaaaggttctcagaattttgacaccaagatttgatcatattgttgt |
393 |
Q |
| |
|
|| |||||||||||||||| ||| ||| || ||||||| |||||||| | |||||||||||||||| || ||| ||||||||||||| ||||| || |
|
|
| T |
45496421 |
taacaaatcagatgataaggaatggtgaaactgtcactgatgtgatgaaggtggaaaaggttctcagaaccttaacatcaagatttgatcacattgtagt |
45496322 |
T |
|
| Q |
394 |
ggtcttagaagaatccaaagatttggatgtgatgaagattgaagaacttcaagcaagccttgaagcac |
461 |
Q |
| |
|
|| | |||| ||||| ||||| || ||| |||||||| || || || || ||||| |||||||||| |
|
|
| T |
45496321 |
ggccctagaggaatctaaagacttagattctatgaagatagaggagctgcaggcaagtcttgaagcac |
45496254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 194 - 461
Target Start/End: Complemental strand, 21793958 - 21793691
Alignment:
| Q |
194 |
ttgaagaaagtgaggcttcaagcattaagaaaacaatacgagatgctgaatatggaggaaggtgaatatgtgagtcaatactttgataaactggtgaatc |
293 |
Q |
| |
|
|||||||| ||||| |||||||| || |||| ||| || || || ||| ||||| |||| |||| ||| ||||||||||||||||| || | |||| |
|
|
| T |
21793958 |
ttgaagaaggtgagacttcaagctttgagaagacagtatgaagtgttgacaatggaagaagaagaatttgttagtcaatactttgataaggtgatcaatc |
21793859 |
T |
|
| Q |
294 |
tagcaaatcagatgataagaaataatgatacaatcactgaattgatgaagttagaaaaggttctcagaattttgacaccaagatttgatcatattgttgt |
393 |
Q |
| |
|
| |||||||||||| ||| ||| ||| || ||||||| |||||||| | |||||||||||||||| || ||| ||||||||||||| ||||| || |
|
|
| T |
21793858 |
ttacaaatcagatgacaaggaatggtgaaactgtcactgatgtgatgaaggtggaaaaggttctcagaaccttaacatcaagatttgatcacattgtagt |
21793759 |
T |
|
| Q |
394 |
ggtcttagaagaatccaaagatttggatgtgatgaagattgaagaacttcaagcaagccttgaagcac |
461 |
Q |
| |
|
|| | |||| ||||| ||||| || ||| |||||||| || ||||| || ||||| |||||||||| |
|
|
| T |
21793758 |
ggccctagaggaatctaaagacttagattctatgaagatagaggaactgcaggcaagtcttgaagcac |
21793691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 194 - 461
Target Start/End: Original strand, 5984098 - 5984365
Alignment:
| Q |
194 |
ttgaagaaagtgaggcttcaagcattaagaaaacaatacgagatgctgaatatggaggaaggtgaatatgtgagtcaatactttgataaactggtgaatc |
293 |
Q |
| |
|
|||||||| ||||| |||||||| || |||| ||| || || || ||| ||||| |||| |||| ||| ||||||||||||||||| || | |||| |
|
|
| T |
5984098 |
ttgaagaaggtgagacttcaagctttgagaagacagtatgaagtgttgacaatggaagaagaagaatctgttagtcaatactttgataaggtgctcaatc |
5984197 |
T |
|
| Q |
294 |
tagcaaatcagatgataagaaataatgatacaatcactgaattgatgaagttagaaaaggttctcagaattttgacaccaagatttgatcatattgttgt |
393 |
Q |
| |
|
| |||||||||||| ||| |||| ||| || ||||||| |||||||| | ||||| ||||||| || || ||| ||||||||||||| ||||| || |
|
|
| T |
5984198 |
ttacaaatcagatgacaaggaatagtgaaactgtcactgatgtgatgaaggtggaaaaagttctcataaccttaacatcaagatttgatcacattgtagt |
5984297 |
T |
|
| Q |
394 |
ggtcttagaagaatccaaagatttggatgtgatgaagattgaagaacttcaagcaagccttgaagcac |
461 |
Q |
| |
|
|| | |||| ||||| ||||| || ||| |||||||| || ||||| || ||||| |||||||||| |
|
|
| T |
5984298 |
ggccctagaggaatctaaagacttagattctatgaagatagaggaactacatgcaagtcttgaagcac |
5984365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 8e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 191 - 461
Target Start/End: Complemental strand, 16847339 - 16847069
Alignment:
| Q |
191 |
aaattgaagaaagtgaggcttcaagcattaagaaaacaatacgagatgctgaatatggaggaaggtgaatatgtgagtcaatactttgataaactggtga |
290 |
Q |
| |
|
||||||||||| ||||| || ||||| || |||| ||| || || || ||| ||||| |||| |||| ||| ||||||||||||||||| || | | |
|
|
| T |
16847339 |
aaattgaagaaggtgagactgcaagctttgagaagacattatgaagtgttgacaatggaagaagaagaatttgttagtcaatactttgataaggtgatca |
16847240 |
T |
|
| Q |
291 |
atctagcaaatcagatgataagaaataatgatacaatcactgaattgatgaagttagaaaaggttctcagaattttgacaccaagatttgatcatattgt |
390 |
Q |
| |
|
|||| |||||||||||| ||| ||| ||| || ||||||| |||||||| | |||||||||||||||| || ||| ||| ||||||||| ||||| |
|
|
| T |
16847239 |
atcttacaaatcagatgacaaggaatggtgaaactgtcactgatgtgatgaaggtggaaaaggttctcagaaccttaacatcaaaatttgatcacattgt |
16847140 |
T |
|
| Q |
391 |
tgtggtcttagaagaatccaaagatttggatgtgatgaagattgaagaacttcaagcaagccttgaagcac |
461 |
Q |
| |
|
|||| | |||| ||||| |||||||| ||| |||||||| || || || |||||||| |||||||||| |
|
|
| T |
16847139 |
agtggccctagaggaatctaaagatttagattctatgaagatagaggagctgcaagcaagtcttgaagcac |
16847069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 257 - 384
Target Start/End: Original strand, 61808 - 61934
Alignment:
| Q |
257 |
gaatatgtgagtcaatactttgataaactggtgaatctagcaaatcagatgataagaaataatgatacaatcactgaattgatgaagttagaaaaggttc |
356 |
Q |
| |
|
|||||||| ||||||||||||||||| || | ||||| |||||||||||| ||| ||| ||| || |||||||| |||||||| | |||||||||| |
|
|
| T |
61808 |
gaatatgttagtcaatactttgataaggtg-tcaatcttacaaatcagatgacaaggaatggtgaaactatcactgatgtgatgaaggtggaaaaggttc |
61906 |
T |
|
| Q |
357 |
tcagaattttgacaccaagatttgatca |
384 |
Q |
| |
|
||||||| ||||| ||||||||||||| |
|
|
| T |
61907 |
tcagaatcgtgacatcaagatttgatca |
61934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 116 - 461
Target Start/End: Complemental strand, 7500915 - 7500570
Alignment:
| Q |
116 |
tttgagaagattatgcgttgtgaaaatgcgaaagaaacttgagatacacttgagagattgtattatggatatgaaaaattgaagaaagtgaggcttcaag |
215 |
Q |
| |
|
||||||||||| |||| || ||||| |||||| || || || ||| || | |||| | |||||| ||| ||| || |||||||| ||||| ||||||| |
|
|
| T |
7500915 |
tttgagaagatcatgcattatgaaagtgcgaaggagacatgggatgcattagagaaactgtattctggtgatggtaagttgaagaaggtgagacttcaag |
7500816 |
T |
|
| Q |
216 |
cattaagaaaacaatacgagatgctgaatatggaggaaggtgaatatgtgagtcaatactttgataaactggtgaatctagcaaatcagatgataagaaa |
315 |
Q |
| |
|
| || |||| ||| || || || ||| ||||| ||| |||| ||| ||||||||||||||||| || | ||||| |||||||||||| ||| || |
|
|
| T |
7500815 |
ctttgagaagacagtatgaagtgttgacaatggaataagaagaatttgttagtcaatactttgataaggtgatcaatcttacaaatcagatgacaaggaa |
7500716 |
T |
|
| Q |
316 |
taatgatacaatcactgaattgatgaagttagaaaaggttctcagaattttgacaccaagatttgatcatattgttgtggtcttagaagaatccaaagat |
415 |
Q |
| |
|
| ||| | |||||| |||||||| | |||||||||||||||| || ||| ||||||||||||| ||||| |||| | ||| ||||| ||||| |
|
|
| T |
7500715 |
tggtgaaattgccactgatgtgatgaaggtggaaaaggttctcagaaccttaacatcaagatttgatcacattgtagtggccctaggggaatctaaagac |
7500616 |
T |
|
| Q |
416 |
ttggatgtgatgaagattgaagaacttcaagcaagccttgaagcac |
461 |
Q |
| |
|
|| ||| | |||||| || ||||| |||||||| |||||||||| |
|
|
| T |
7500615 |
ttagattctacgaagatagaggaactgcaagcaagtcttgaagcac |
7500570 |
T |
|
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