View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4175_high_13 (Length: 358)
Name: NF4175_high_13
Description: NF4175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4175_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 54 - 319
Target Start/End: Complemental strand, 42282014 - 42281743
Alignment:
| Q |
54 |
attgaaaggtatattcttgaaaaaatttacgagccaaataatttggtccattaaggagttaatcgactgaacccagtaaaccga------ctaaaccgag |
147 |
Q |
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| T |
42282014 |
attgaaaggtatattcttgaaaaaatttacgagccaaataatttggtccattaaggagttaatagactgaacccagtaaaccgaaaccaactaaaccgag |
42281915 |
T |
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| Q |
148 |
actggaattgagcctaggagttccaacgatggattagtgcagatcgaggttttggccccgattttcgaccgaaattgactgatgaccagccctaccctta |
247 |
Q |
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|||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42281914 |
actggaattgagcctaggagttccaacgatgggttagcgcagatcgaggttttggccccgattttcgaccgaaattgactgatgaccagccctaccctta |
42281815 |
T |
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| Q |
248 |
gagcacatgttgacatttgccctttttagacaatcataggattataagaacacttttgtcaccaatagaaat |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42281814 |
gagcacatgttgacatttgccctttttagacaatcataggattataagaacacttttgtcaccaatagaaat |
42281743 |
T |
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