View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4175_high_23 (Length: 252)
Name: NF4175_high_23
Description: NF4175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4175_high_23 |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 4368309 - 4368075
Alignment:
| Q |
1 |
ttcattcaggtgtgagacactgacagctgagaatgcagctgacaaccacatcaggcagttgttcatgccaaaactagctgggatagatggcgttggtacg |
100 |
Q |
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| T |
4368309 |
ttcattcaggtgtgagacactgacagctgagaatgcagctgacaaccacatcaggcagttgttcatgccaaaactagctgggatagatggtgttggtatg |
4368210 |
T |
|
| Q |
101 |
ttaatattcgagatttgttttggtctgatttatattttataaaccctattggatttactgaaatctattttctttcatttacttggatgaagttttaagc |
200 |
Q |
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| T |
4368209 |
ttaatattcgagatttgttttggtctgatttatgttttataaaccctattggatttactgaaatctattttctttcatttacttggatgaagttttaagc |
4368110 |
T |
|
| Q |
201 |
attcattgtattataaacagcttaatctgtctagt |
235 |
Q |
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|||||||||||||||||||||||||||||| |||| |
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| T |
4368109 |
attcattgtattataaacagcttaatctgtttagt |
4368075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 4363875 - 4363651
Alignment:
| Q |
1 |
ttcattcaggtgtgagacactgacagctgagaatgcagctgacaaccacatcaggcagttgttcatgccaaaactagctgggatagatggcgttggtacg |
100 |
Q |
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||||| || |||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| | | |
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| T |
4363875 |
ttcatccaagtgtgagacactgaaagctgagaatgcagctgatgaccacatcaggcagttgttcttgccaaaactagctgggatagat---------atg |
4363785 |
T |
|
| Q |
101 |
ttaatattcgagatttgttttggtctgatttatattt------tataaaccctattggatttactgaaatctattttctttcatttacttggatgaagtt |
194 |
Q |
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| T |
4363784 |
ttaatattcgagatttgttttggtctgatttatgtttattttttataaaccctattggatttactgaaatgtatt--ctttaatttacttggatgaagtt |
4363687 |
T |
|
| Q |
195 |
ttaagcattcattgtattataaacagcttaatctgt |
230 |
Q |
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||| |||||||||||||||||||||||||||||||| |
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| T |
4363686 |
ttatgcattcattgtattataaacagcttaatctgt |
4363651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 25 - 132
Target Start/End: Complemental strand, 4358499 - 4358392
Alignment:
| Q |
25 |
agctgagaatgcagctgacaaccacatcaggcagttgttcatgccaaaactagctgggatagatggcgttggtacgttaatattcgagatttgttttggt |
124 |
Q |
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||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||| ||||||| || ||||||| |||||||||| || |
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| T |
4358499 |
agctgagaatgcagctgacgaccacatcaggcagttgttctagccaaaactagctgggatggatggtgttggtatgtcaatattcaagatttgtttcagt |
4358400 |
T |
|
| Q |
125 |
ctgattta |
132 |
Q |
| |
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|||||||| |
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| T |
4358399 |
ctgattta |
4358392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 108
Target Start/End: Original strand, 4417830 - 4417925
Alignment:
| Q |
10 |
gtgtgagacactgacagctgagaatgcagctgacaaccacatcaggcagttgttcatgccaaaactagctgggatagatggcgttggtacgttaatatt |
108 |
Q |
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|||||||||||||| ||||||| |||||||||| ||||||||||| | |||||||||||||||||||||||| |||| ||||||| || |||||| |
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| T |
4417830 |
gtgtgagacactgaaagctgaggatgcagctgaagaccacatcaggaa---gttcatgccaaaactagctgggatggatgctgttggtatgtcaatatt |
4417925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 229
Target Start/End: Complemental strand, 4358369 - 4358339
Alignment:
| Q |
199 |
gcattcattgtattataaacagcttaatctg |
229 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
4358369 |
gcattcattgtattataaacagcttaatctg |
4358339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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