View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4175_high_3 (Length: 516)
Name: NF4175_high_3
Description: NF4175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4175_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 17 - 477
Target Start/End: Complemental strand, 42282210 - 42281743
Alignment:
| Q |
17 |
aattaatgtcttaatatggctatttaaattgtaatttattgagtatgctgtgtcaagtgattaaccttaagattagtatgaatgagcttaataatatgtt |
116 |
Q |
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| T |
42282210 |
aattaatgtcttaatatggctatttaaattgtaatttattgagtatgctgtgtcaattgattaaccttaagattagtatgaatgagcttaataatatgtt |
42282111 |
T |
|
| Q |
117 |
gaatggtccaatttaagaaaacaatatgtatttgaatctacacacatgcccatttttagaattactaaggnnnnnnnnn-ccagaaatcnnnnnnnattg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
42282110 |
gaatggtccaatttaagaaaacaatatgtatttgaatctacacacatgcccatttttagaattactaaggaaaaaaaaaaccagaaatctttttttattg |
42282011 |
T |
|
| Q |
216 |
aaaggtatattcttgaaaaaatttacgagccaaataatttggtccattaaggagttaatcgactgaacccagtaaaccga------ctaaaccgagactg |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
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| T |
42282010 |
aaaggtatattcttgaaaaaatttacgagccaaataatttggtccattaaggagttaatagactgaacccagtaaaccgaaaccaactaaaccgagactg |
42281911 |
T |
|
| Q |
310 |
gaattgagcctaggagttccaacgatggattagtgcagatcgaggttttggccccgattttcgaccgaaattgactgatgaccagccctacccttagagc |
409 |
Q |
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|||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42281910 |
gaattgagcctaggagttccaacgatgggttagcgcagatcgaggttttggccccgattttcgaccgaaattgactgatgaccagccctacccttagagc |
42281811 |
T |
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| Q |
410 |
acatgttgacatttgccctttttagacaatcataggattataagaacacttttgtcaccaatagaaat |
477 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42281810 |
acatgttgacatttgccctttttagacaatcataggattataagaacacttttgtcaccaatagaaat |
42281743 |
T |
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