View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4175_high_30 (Length: 238)
Name: NF4175_high_30
Description: NF4175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4175_high_30 |
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| [»] scaffold0034 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 77 - 221
Target Start/End: Complemental strand, 14179618 - 14179473
Alignment:
| Q |
77 |
gtataccaaataacattgttattatagaaaatcatgtttaatggtataattggaatgata-aaaacggcaaaaccaaatacatatttatacttatgcttt |
175 |
Q |
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| T |
14179618 |
gtataccaaataacattgttattatagaaaatcatgtttaatggtataattggaatgatataaaacggcaaaaccaaatacatatttatacttatgcttt |
14179519 |
T |
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| Q |
176 |
tcttagggaggttttcaccgaatatgcaaaggaaattggtccattg |
221 |
Q |
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| T |
14179518 |
tcttagggaggctttcaccgaatatgcaaaggagattagttcattg |
14179473 |
T |
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Target: scaffold0034 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0034
Description:
Target: scaffold0034; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 132
Target Start/End: Original strand, 99430 - 99467
Alignment:
| Q |
95 |
ttattatagaaaatcatgtttaatggtataattggaat |
132 |
Q |
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| T |
99430 |
ttattatataaaattatgtttaatggtataattggaat |
99467 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 140
Target Start/End: Original strand, 37143367 - 37143412
Alignment:
| Q |
95 |
ttattatagaaaatcatgtttaatggtataattggaatgataaaaa |
140 |
Q |
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| T |
37143367 |
ttattatagaaaaagttgtttaagggtataattggaatgataaaaa |
37143412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 135
Target Start/End: Original strand, 18461354 - 18461394
Alignment:
| Q |
95 |
ttattatagaaaatcatgtttaatggtataattggaatgat |
135 |
Q |
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| T |
18461354 |
ttattatagaaaaagttgtttaatggtataattggaatgat |
18461394 |
T |
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