View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4175_high_5 (Length: 504)
Name: NF4175_high_5
Description: NF4175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4175_high_5 |
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| [»] scaffold0286 (2 HSPs) |
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Alignment Details
Target: scaffold0286 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 8 - 240
Target Start/End: Complemental strand, 13364 - 13132
Alignment:
| Q |
8 |
agattatacttaccacacaatcgaactttgaattacaagagcctcttccctgaaaatgggaggggttaacacccaacaaatatccatgcattatcagatg |
107 |
Q |
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| T |
13364 |
agattatacttaccacatgaccaaacattgaattacaagagcctcttccctgaaaatgggaggggttaacacccaacaaatatccatgcattatcagatg |
13265 |
T |
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| Q |
108 |
caggttgaattgttttttctaaaggtaaatagatataaacaaacctgaacgggaaaaaacactctctggaatagaacagaatacaaagggaaaagctaca |
207 |
Q |
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| T |
13264 |
caggttgaattgttttttctaaaggtaaatagatatatacaaacctgaacgggaaaaaacactctccggaatagaacagaatacaaagagaaaagctaca |
13165 |
T |
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| Q |
208 |
tacaagtctgtgccctacaggaactcaggggac |
240 |
Q |
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| T |
13164 |
tacaagtctgtgccctacaggaactcgggggac |
13132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0286; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 327 - 485
Target Start/End: Complemental strand, 13044 - 12886
Alignment:
| Q |
327 |
gatgcgggtggaattgtgatagcgaactattgagtcttcatctaattttctcattcatacggattggtgaatcgaatatcctccatactacttttcagct |
426 |
Q |
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| T |
13044 |
gatgcgggtggaattgtgatagagaactattgagtcttcatctaattttctcattcatacggattggtgaatcgaatatcctccatactacttttcagct |
12945 |
T |
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| Q |
427 |
tgaatacgtgaattccactttctataaccaatgcttcctctatgcaaccctcacactta |
485 |
Q |
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| T |
12944 |
tgaatacgtgaattccactttctataaccaatgcttcctctatgcaaccctcacactta |
12886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 8 - 240
Target Start/End: Original strand, 2169898 - 2170130
Alignment:
| Q |
8 |
agattatacttaccacacaatcgaactttgaattacaagagcctcttccctgaaaatgggaggggttaacacccaacaaatatccatgcattatcagatg |
107 |
Q |
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||||||||||||||||| | | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2169898 |
agattatacttaccacatgaccaaacattgaattacaagagcctcttccctgaaaatgggaggggttaacacccaacaaatatccatgcattatcagatg |
2169997 |
T |
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| Q |
108 |
caggttgaattgttttttctaaaggtaaatagatataaacaaacctgaacgggaaaaaacactctctggaatagaacagaatacaaagggaaaagctaca |
207 |
Q |
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| T |
2169998 |
caggttgaattgttttttctaaaggtaaatagatatatacaaacctgaacgggaaaaaacactctccggaatagaacagaatacaaagagaaaagctaca |
2170097 |
T |
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| Q |
208 |
tacaagtctgtgccctacaggaactcaggggac |
240 |
Q |
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| T |
2170098 |
tacaagtctgtgccctacaggaactcgggggac |
2170130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 327 - 485
Target Start/End: Original strand, 2170217 - 2170375
Alignment:
| Q |
327 |
gatgcgggtggaattgtgatagcgaactattgagtcttcatctaattttctcattcatacggattggtgaatcgaatatcctccatactacttttcagct |
426 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2170217 |
gatgcgggtggaattgtgatagagaactattgagtcttcatctaattttctcattcatacggattggtgaatcgaatatcctccatactacttttcagct |
2170316 |
T |
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| Q |
427 |
tgaatacgtgaattccactttctataaccaatgcttcctctatgcaaccctcacactta |
485 |
Q |
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| T |
2170317 |
tgaatacgtgaattccactttctataaccaatgcttcctctatgcaaccctcacactta |
2170375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 373 - 485
Target Start/End: Complemental strand, 2188357 - 2188245
Alignment:
| Q |
373 |
tttctcattcatacggattggtgaatcgaatatcctccatactacttttcagcttgaatacgtgaattccactttctataaccaatgcttcctctatgca |
472 |
Q |
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||||||| | || ||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||| |||||||| ||| |
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| T |
2188357 |
tttctcaattatgcggattggtaaatcgaatatcctccatactagttttcagcttgaatacgtgaactccactttctataaacaattcttcctctctgcc |
2188258 |
T |
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| Q |
473 |
accctcacactta |
485 |
Q |
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|||||||||||| |
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| T |
2188257 |
gccctcacactta |
2188245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 402 - 453
Target Start/End: Complemental strand, 16694636 - 16694585
Alignment:
| Q |
402 |
atatcctccatactacttttcagcttgaatacgtgaattccactttctataa |
453 |
Q |
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| T |
16694636 |
atatcctccatgctacttttctgcttgaataagtgaattccactttctataa |
16694585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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