View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4175_high_6 (Length: 500)
Name: NF4175_high_6
Description: NF4175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4175_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 4 - 483
Target Start/End: Original strand, 44882818 - 44883297
Alignment:
| Q |
4 |
gctgtgaagttctgttttgctgctggatgttgttgtctataggaaattgttttgaaacatctaatagtgctgctgcagcaggtgctggggtcatggattg |
103 |
Q |
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| T |
44882818 |
gctgtgaagttctgttttgctgctggatgttgttgtctataggaaattgttttgaaacatctaatagtgctgctacagcaggtgctggggtcatggattg |
44882917 |
T |
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| Q |
104 |
gtactgaggaggtgcatttgcatttgcaggctgctgttgtgtgtagtatacttgttcttgcgtagctccgcctccaccatattcataaccataaatagtc |
203 |
Q |
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| T |
44882918 |
gtactgaggaggtgcatttgcatttgcgggctgctgttgtgtgtagtatacttgttcttgcgtagctccacctccaccatattcataaccataaatagtc |
44883017 |
T |
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| Q |
204 |
ttctgtggtggatgatgaatattttgagataaactcacgtattgctgctgatattgattagaacgaacttgaataaaagatggatttgatgccataggag |
303 |
Q |
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| T |
44883018 |
ttctgtggtggatgatgaatattttgagataaactcacgtattgctgctgatattgattagaaagaacttgaataaaagatggatttgatgccataggag |
44883117 |
T |
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| Q |
304 |
ttttataaacacttggattcacctcaggtacaacactttgtggtattagtggcatagttgaagctacgacatttgtgtcagataaattggattgtaaagc |
403 |
Q |
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| T |
44883118 |
ttttataaacacttggattcacctcaggtacaacactttgtggtattagtggcatagttgaagctacgacatttgtgtcagataaattggattgtaaagc |
44883217 |
T |
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| Q |
404 |
catgttgtatggttgtgtcgatccatgtccaattggcattacataaacaggatactgatgaagttggtgtgattgtgatg |
483 |
Q |
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| T |
44883218 |
catgttgtatggttgtgtcgatccatgtccaattggcattacataaacaggatactgatgaagttggtgtgattgtgatg |
44883297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 92 - 230
Target Start/End: Complemental strand, 9019764 - 9019638
Alignment:
| Q |
92 |
ggtcatggattggtactgaggaggtgcatttgcatttgcaggctgctgttgtgtgtagtatacttgttcttgcgtagctccgcctccaccatattc---a |
188 |
Q |
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| T |
9019764 |
ggtcatagattggtactaaggaggtgcatttgcat------gctgctgttgtgggtagaatacttgttcttgcttag------ctccaccatattcataa |
9019677 |
T |
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| Q |
189 |
taaccataaatagtcttctgtggtggatgatgaatattttga |
230 |
Q |
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| T |
9019676 |
taaccataaaaag---gctgtggtggatgatgaatattttga |
9019638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 36 - 123
Target Start/End: Complemental strand, 8978469 - 8978382
Alignment:
| Q |
36 |
ttgtctataggaaattgttttgaaacatctaatagtgctgctgcagcaggtgctggggtcatggattggtactgaggaggtgcatttg |
123 |
Q |
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| T |
8978469 |
ttgtatataggaaattgttttgaaaaatcggacattgttgcagcagcgactgctgtggtcatggattggtactgagaaggtgcatttg |
8978382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 133 - 170
Target Start/End: Original strand, 1253553 - 1253590
Alignment:
| Q |
133 |
gctgctgttgtgtgtagtatacttgttcttgcgtagct |
170 |
Q |
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| T |
1253553 |
gctgcttttgtgtgtagtatacttgttcttgcgtagct |
1253590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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