View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4175_low_10 (Length: 429)
Name: NF4175_low_10
Description: NF4175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4175_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 373; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 18 - 419
Target Start/End: Complemental strand, 11779390 - 11778989
Alignment:
| Q |
18 |
cattagacttgacctagatacaacccaaatgaaaataacacaatacatcacagaccagatagatcaactctaattaattctaacagaaaacactcctcat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11779390 |
cattagacttgacctagatacaacccaaatgaaaataacacaatacatcacagaccagatagatcaactctaattaattctaacagaaaacactcctcat |
11779291 |
T |
|
| Q |
118 |
gaatacaacctagtgcatccatgtacgagcacgaaaacatgctataaacatgtatgtcatgaannnnnnngtaaactctctcgaacaatcttgcaaatgt |
217 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
11779290 |
gaatacaacctagcgcatccatgtacgagcacgaaaacatgctataaacatgtatgtcatgaatttttttgtaaactctctcgaacaatcttgcaaatgt |
11779191 |
T |
|
| Q |
218 |
atgtactgataaaaagagtttaaataaatcaatctaaacaagcttttattataaggaaatgaacttccatataaaaaatgcagaagaaaagaaactttta |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11779190 |
atgtactgataaaaagagtttaaataaatcaatctaaacaagcttttattataaggaaatgaacttccatataaaaaatgcagaagaaaagaaactttta |
11779091 |
T |
|
| Q |
318 |
catactttgatcacatctgtgagattaccaactaccatggatacatatttttcatgagtgtataagcttgaattttctgcaaaataatcattgtttccta |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
11779090 |
catactttgatcacatctgtgagattaccaactaccatggatacatatttttcatgagtgtataagctggaattttctgcaaaataatcattgtttccta |
11778991 |
T |
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| Q |
418 |
tg |
419 |
Q |
| |
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|| |
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| T |
11778990 |
tg |
11778989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 291 - 415
Target Start/End: Complemental strand, 11764706 - 11764582
Alignment:
| Q |
291 |
aaaaatgcagaagaaaagaaacttttacatactttgatcacatctgtgagattaccaactaccatggatacatatttttcatgagtgtataagcttgaat |
390 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
11764706 |
aaaaatgcagaagaaaagaaacttttacatactttgatcacatctgtgagattaccaactaccatggatacatatttttcatgagtgtataagctggaat |
11764607 |
T |
|
| Q |
391 |
tttctgcaaaataatcattgtttcc |
415 |
Q |
| |
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|||||| ||||||||||||| |||| |
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| T |
11764606 |
tttctgaaaaataatcattgcttcc |
11764582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 201 - 409
Target Start/End: Complemental strand, 11784623 - 11784416
Alignment:
| Q |
201 |
aacaatcttgcaaat-gtatgtactgataaaaagagtttaaataaatcaatctaaacaagcttttattataaggaaatgaacttccatataaaaaatgca |
299 |
Q |
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||||||||| ||||| || |||||||||||||| ||||||||||| ||||| |||| | ||||||||||||| ||| ||||||| ||||||||| | || |
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| T |
11784623 |
aacaatcttacaaattgtttgtactgataaaaa-agtttaaataagtcaatttaaaaatgcttttattataaccaaaagaacttcaatataaaaa-taca |
11784526 |
T |
|
| Q |
300 |
gaagaaaagaaacttttacatactttgatcacatctgtgagattaccaactaccatggatacatatttttcatgagtgtataagcttgaattttctgcaa |
399 |
Q |
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|||| |||| |||| ||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||| |
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| T |
11784525 |
gaagtaaagtaactcttacatactttgatcactgttgtaagattaccaactaccatggatacgtatttttcatgagtgtataagctggaattttctacaa |
11784426 |
T |
|
| Q |
400 |
aataatcatt |
409 |
Q |
| |
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|||||||||| |
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| T |
11784425 |
aataatcatt |
11784416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 262 - 410
Target Start/End: Complemental strand, 11770925 - 11770775
Alignment:
| Q |
262 |
tttattataaggaaatgaacttccatat--aaaaaatgcagaagaaaagaaacttttacatactttgatcacatctgtgagattaccaactaccatggat |
359 |
Q |
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|||||||||| ||||||||||| |||| ||||||| ||||| |||| ||||||||||||||||||| | ||| | ||||||||| ||||| ||| |
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| T |
11770925 |
tttattataacgaaatgaactttaatattaaaaaaatatagaagtaaagtgacttttacatactttgatccaagttgtaatattaccaaccaccattgat |
11770826 |
T |
|
| Q |
360 |
acatatttttcatgagtgtataagcttgaattttctgcaaaataatcattg |
410 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
11770825 |
acatatttttcatgagtgtataagctggaattttctgcaaaataatcattg |
11770775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 20626424 - 20626510
Alignment:
| Q |
18 |
cattagacttgacctagatacaacccaaatgaaaataacacaatacatcacagaccagatagatcaactctaattaattctaacagaaa |
106 |
Q |
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|||||||| ||||| || ||||||||||||| |||||||||||||| ||||||| ||| ||||| ||||||||| |||||||||| |
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| T |
20626424 |
cattagacctgacc-aggtacaacccaaatgggaataacacaatacaatacagacctcgtagttcaac-ctaattaatcctaacagaaa |
20626510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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