View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4175_low_11 (Length: 396)
Name: NF4175_low_11
Description: NF4175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4175_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 331; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 16 - 380
Target Start/End: Original strand, 2563766 - 2564127
Alignment:
| Q |
16 |
gatgaaacgtgagattagtgagacttttccaaaggtccttccaacgtttagacaaaacacaagtctgaatagaacattttatgttcataaattcaaatat |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2563766 |
gatgaaacgtgagattagtgagacttttccaaaggtccttccaacgtttagacaaaacacaagtctgaatagaacattttatgttcataaattcaaatat |
2563865 |
T |
|
| Q |
116 |
atgcagaagaagatagttcggcagatcactgagtctgtctgcgttgttaccgtcttgtatatccgtttcactttggcttttcatcttcaacaatactcct |
215 |
Q |
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|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2563866 |
atgcagaagaagatggttcggcagatcactgagtctgtctgcgttgttaccgtcttgtatatctgtttcactttggcttttcatcttcaacaatactcct |
2563965 |
T |
|
| Q |
216 |
ttgtttctttgtcttcagtaacacttgactgacctaacaaagttaaacaaatatgtatttcctaaagtcattgcttagaagaatcattaaccatatatca |
315 |
Q |
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|
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2563966 |
ttgtttctttgtcttcagttacacttgactgacctaacaaagttaaacaaatatatatttcttaaagtcattgcttagaagaatcattaaccatatatca |
2564065 |
T |
|
| Q |
316 |
tccaagacgactcatgtaatatgacagcaatattaataatatgaaagcaaaatcacaccacaagt |
380 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2564066 |
tccaa---gactcatgtaatatgacagcaatattaataatatgaaagcaaaatcacaccacaagt |
2564127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 16 - 124
Target Start/End: Original strand, 34800468 - 34800576
Alignment:
| Q |
16 |
gatgaaacgtgagattagtgagacttttccaaaggtccttccaacgtttagacaaaacacaagtctgaatagaacattttatgttcataaattcaaatat |
115 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||| ||| ||||| ||||||||||||| ||| |
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|
| T |
34800468 |
gatgcaacgtgagattagcgagacttttccaaaggctcttccatcgtttagacaaaacacaagtctgaacagattgctttatattcataaattcaattat |
34800567 |
T |
|
| Q |
116 |
atgcagaag |
124 |
Q |
| |
|
||||||||| |
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|
| T |
34800568 |
atgcagaag |
34800576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 124
Target Start/End: Original strand, 34776536 - 34776644
Alignment:
| Q |
16 |
gatgaaacgtgagattagtgagacttttccaaaggtccttccaacgtttagacaaaacacaagtctgaatagaacattttatgttcataaattcaaatat |
115 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||| || |||||| ||||||||||||||||||||| ||| ||| | |||| ||||||||||||| ||| |
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|
| T |
34776536 |
gatgcaacttgagattagtgagacttttccaaacgttcttccatcgtttagacaaaacacaagtccgaacagattgtcttatattcataaattcaattat |
34776635 |
T |
|
| Q |
116 |
atgcagaag |
124 |
Q |
| |
|
||||||||| |
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|
| T |
34776636 |
atgcagaag |
34776644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 221 - 268
Target Start/End: Original strand, 34800652 - 34800699
Alignment:
| Q |
221 |
tctttgtcttcagtaacacttgactgacctaacaaagttaaacaaata |
268 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
34800652 |
tctttatcttcagtaacacttgactgacctaacaaagttacacaaata |
34800699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 260
Target Start/End: Original strand, 34776720 - 34776760
Alignment:
| Q |
221 |
tctttgtcttcagtaacactt-gactgacctaacaaagtta |
260 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||||||||| |
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|
| T |
34776720 |
tctttatcttcagtaacacttcgactgacctaacaaagtta |
34776760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 19 - 149
Target Start/End: Complemental strand, 24985806 - 24985676
Alignment:
| Q |
19 |
gaaacgtgagattagtgagacttttccaaaggtccttccaacgtttagacaaaacacaagtctgaatagaacattttatgttcataaattcaaatatatg |
118 |
Q |
| |
|
||||| ||||||||||| || ||||||||||||||||||| ||||||||||| || || ||||||| ||| ||| ||||||||||||||| |||||| |
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|
| T |
24985806 |
gaaacttgagattagtgcgatttttccaaaggtccttccatcgtttagacaagacgcatgtctgaacagattgtttagtgttcataaattcaattatatg |
24985707 |
T |
|
| Q |
119 |
cagaagaagatagttcggcagatcactgagt |
149 |
Q |
| |
|
|| ||| |||| || ||||| ||||||||| |
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|
| T |
24985706 |
caaaagcagatggtcaggcaggtcactgagt |
24985676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 27 - 156
Target Start/End: Original strand, 23273517 - 23273646
Alignment:
| Q |
27 |
agattagtgagacttttccaaaggtccttccaacgtttagacaaaacacaagtctgaatagaacattttatgttcataaattcaaatatatgcagaagaa |
126 |
Q |
| |
|
|||||||||||| ||||||||||| |||||| |||||||||| ||| |||||||||| ||| |||||||||||||||||||| ||||| ||||| | |
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| T |
23273517 |
agattagtgagatgtttccaaaggttcttccatcgtttagacagaacgcaagtctgaacagattgttttatgttcataaattcaatgatatgaagaagga |
23273616 |
T |
|
| Q |
127 |
gatagttcggcagatcactgagtctgtctg |
156 |
Q |
| |
|
|| || || || |||||||||||||||| |
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|
| T |
23273617 |
catggtcaggaaggtcactgagtctgtctg |
23273646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 156
Target Start/End: Complemental strand, 23410745 - 23410616
Alignment:
| Q |
27 |
agattagtgagacttttccaaaggtccttccaacgtttagacaaaacacaagtctgaatagaacattttatgttcataaattcaaatatatgcagaagaa |
126 |
Q |
| |
|
||||| |||||| |||||||||||||||||| |||||||||| ||| || ||||||| ||| ||||||||||||| |||||| ||||| ||||| | |
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|
| T |
23410745 |
agattggtgagatgtttccaaaggtccttccatcgtttagacagaacgcaggtctgaacagattgttttatgttcatagattcaatgatatgaagaagga |
23410646 |
T |
|
| Q |
127 |
gatagttcggcagatcactgagtctgtctg |
156 |
Q |
| |
|
|| || || || |||||||||||||||| |
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|
| T |
23410645 |
catggtcaggaaggtcactgagtctgtctg |
23410616 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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