View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4175_low_13 (Length: 367)
Name: NF4175_low_13
Description: NF4175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4175_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 18 - 355
Target Start/End: Complemental strand, 47636991 - 47636663
Alignment:
| Q |
18 |
atgacatgatccctataaagtcggaaagactaaataaaatcaagaagcatagatttaaagctttctttactcacataggttactaaatcatcagcaacac |
117 |
Q |
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| T |
47636991 |
atgacgtgatccctataaagtcggaaagactaaataaaatcaagaagcatagatttaaagctttctttactcacataggttactaaatcatcagcaacac |
47636892 |
T |
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| Q |
118 |
ctgtttcatagaaagagttgctcttcttgccacttataatctccataacgaggactccaaaactgtatacatcagactttatcgagaactctccatgcat |
217 |
Q |
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| T |
47636891 |
ctgtttcatagaaagagttgctcttcttgccacttataatctccataacgaggactccaaaactgtatacatcagactttatcgagaactctccatgcat |
47636792 |
T |
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| Q |
218 |
tgcatactccggagacatgtaaccacttaaacacaaacacatatttatcattgctataaaacactatcatccacaaaaaggacaagtacttcaacaaata |
317 |
Q |
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| T |
47636791 |
tgcatactccggagacatgtaaccacttaaacacaaacacatatttatcattgctataaaacactatcatccacaaaaaggacaagtactt--------- |
47636701 |
T |
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| Q |
318 |
tatgtcgcatatataaacatgtacttactatgtgccta |
355 |
Q |
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| T |
47636700 |
tatgtcgcatatataaacatgtacttactatgtgccta |
47636663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 209 - 244
Target Start/End: Complemental strand, 47627698 - 47627663
Alignment:
| Q |
209 |
tccatgcattgcatactccggagacatgtaaccact |
244 |
Q |
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| T |
47627698 |
tccatgcattgcatattccggagacatgtaaccact |
47627663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 168 - 244
Target Start/End: Original strand, 15981925 - 15982001
Alignment:
| Q |
168 |
aggactccaaaactgtatacatcagactttatcgagaactctccatgcattgcatactccggagacatgtaaccact |
244 |
Q |
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| T |
15981925 |
aggactccaaagctgtacacatcagactttgtcgaaaaaactccttccattgcatactctggagacatgtaaccact |
15982001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 168 - 244
Target Start/End: Original strand, 19148946 - 19149022
Alignment:
| Q |
168 |
aggactccaaaactgtatacatcagactttatcgagaactctccatgcattgcatactccggagacatgtaaccact |
244 |
Q |
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| T |
19148946 |
aggactccaaagctgtacacatcagactttgtcgaaaaaactccttccattgcatactctggagacatgtaaccact |
19149022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 171 - 244
Target Start/End: Original strand, 36437508 - 36437581
Alignment:
| Q |
171 |
actccaaaactgtatacatcagactttatcgagaactctccatgcattgcatactccggagacatgtaaccact |
244 |
Q |
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| T |
36437508 |
actccaaagctgtatacatcagacttcaccgaaaattgtccttccatggcatactccggagacatataaccact |
36437581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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