View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4175_low_19 (Length: 314)
Name: NF4175_low_19
Description: NF4175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4175_low_19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 9 - 299
Target Start/End: Original strand, 26594799 - 26595091
Alignment:
| Q |
9 |
attattctagaaacttagcactgctcttaattttattttgggtgttagcacgttcctgtaaataattgtttttataccattgcatgttgatgaagcaact |
108 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26594799 |
attattctaaaaacttagcactgctcttaattttattttgggtgttagcacgttcctgtaaataattgtttttataccattgcatgttgatgaagcaact |
26594898 |
T |
|
| Q |
109 |
cactgtcacatgacatcatcatctgacgtgg-----catctcatgtcatgaaagtcaaattacaatctcttaaggttaagataccgtaaaaacaattttg |
203 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
26594899 |
cactgtcacatgacatcatcatctcacgtggcatctcatctcatgtcatgaaagtcaaattacaatctgttaaggttaagataccgtaaaaacaattttg |
26594998 |
T |
|
| Q |
204 |
tcttccgtaatagatttggtaaagatcatgtcgatggagcacaaattcacacttaacttttttgttggtgataatggttttgtaagagttgttatt |
299 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
26594999 |
tcttccgcaatagatttggtaaagatcatgtcgatggagcacaaattcacacttaacttttttgt---tgataatggttttgtaagagttgttatt |
26595091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 217 - 270
Target Start/End: Original strand, 26608561 - 26608614
Alignment:
| Q |
217 |
atttggtaaagatcatgtcgatggagcacaaattcacacttaacttttttgttg |
270 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||||| ||||||| |||| |
|
|
| T |
26608561 |
atttggtaaagatcatgtcgattggacacaaattcacacttcactttttggttg |
26608614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University